1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...attcatttgattcattcaggggattttcaatcactttattttgtgtttgcaatcaacaatgcaagatcctcctgacgagtaacaagtcctacttttgcagGCCCATGGGATTGACCACCTTATTATTCCCACAAGAGACTACCTGTTTGCACCAGCCCTCCAGGATATTTGTCAAGCCATAGATTTTATCCACC
species | Oryza sativa |
transcript | LOC_Os01g53710.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TAACATTGAATGAGGCTTATGAGACCCTGGTCCCAACATCTTTATACCAG GCCCATGGGATTGACCACCTTATTATTCCCACAAGAGACTACCTGTTTGCAEST: gi|58657111|gb|CK045791.1|CK045791
genomic: TAACATTGAATGAGGCTTATGAGACCCTGGTCCCAACATCTTTATACCAGgtaaaatctc ... acttttgcagGCCCATGGGATTGACCACCTTATTATTCCCACAAGAGACTACCTGTTTGCA
EST: TAACATTGAATGAGGCTTATGAGACCCTGGTCCCAACATCTTTATACCAG GCCCATGGGATTG
genomic: TAACATTGAATGAGGCTTATGAGACCCTGGTCCCAACATCTTTATACCAGgtaaaatctc ... acttttgcagGCCCATGGGATTG
tttgcaatcaacaatgcaagatcctcctgacgagtaacaagtcctacttttgcagGCCCATGGGATTGACCACCTTATTATTCCCACAAGAGACTACCTGTTTGCACCAGCCCTCCAGGATATTTGTCAAGCCATAGATTTTATCCACC
gagtaac putative branch site (score: 18)
tcctactttt putative PPT
tactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attcatttgattcattcaggggattttcaatcactttattttgtgtttgcaatcaacaatgcaagatcctcctgacgagtaacaagtcctacttttgcagGCCCATGGGATTGACCACCTTATTATTCCCACAAGAGACTACCTGTTTGCACCAGCCCTCCAGGATATTTGTCAAGCCATAGATTTTATCCACC
- - - -tgattca
- - - - - - - - - - - - - - - - - - - - - -tgtttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - caatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtaacaa