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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGACATGCGAATGGCTTGGGGCAAAAAAATCAGCTTGGACATTGGTTGGCCATTGTAAAGGTCCTCACCAACTATTTGGATGTTCTAAGGGCAAACCATgtaggtgaccaattgttatggacaaatagcatcgattggcagaaggctctgaatgcacttgactatttggttgaatttgcag

Basic information

species Oryza sativa
transcript LOC_Os01g51630.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29628567|gb|CB633578.1|CB633578
EST:     CCATTGTAAAGGTCCTCACCAACTATTTGGATGTTCTAAGGGCAAACCAT                         GTTCCATCAATTTTGGTGCACAAGCTATTCACACAGATATTTTCGCTGATT
genomic: CCATTGTAAAGGTCCTCACCAACTATTTGGATGTTCTAAGGGCAAACCATgtaggtgacc ... gaatttgcagGTTCCATCAATTTTGGTGCACAAGCTATTCACACAGATATTTTCGCTGATT
EST: gi|88326051|gb|CI651101.1|CI651101
EST:     TTTGGATGTTCTAAGGGCAAACCAT                         GTTCCATCAATTTTGGTGCACAAGCTATTCACACAGATATTTTCGCTGATT
genomic: TTTGGATGTTCTAAGGGCAAACCATgtaggtgacc ... gaatttgcagGTTCCATCAATTTTGGTGCACAAGCTATTCACACAGATATTTTCGCTGATT
EST: gi|29629430|gb|CB634439.1|CB634439
EST:     CATTGTAAAGGTCCTCACNCA-CTATTTGGATGTTCTAAGGGCAAACCAT                         GTTCCATCAATTTTGGTGCACAAGCTATTCA
genomic: CATTGTAAAGGTCCTCAC-CAACTATTTGGATGTTCTAAGGGCAAACCATgtaggtgacc ... gaatttgcagGTTCCATCAATTTTGGTGCACAAGCTATTCA