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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCACATCAAGCTTGAAAAGTGCAGTACGCGAGGAATCAAATACAGTCACAACCTTTTCCATACTGCTAGATGATGATTCATGgtcagctgtctgttacatttggatgaatgaattagtagcttttcagtttaggaccagagttctgatggctcatggttttacttgcttcgttacttaatgcag

Basic information

species Oryza sativa
transcript LOC_Os01g51630.1
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88587511|gb|CI705263.1|CI705263
EST:     GAATCAAATACAGTCACAACCTTTTCCATACTGCTAGATGATGATTCATG                         CATACCTTTTTCACTTGATGATATTGCAAAGACAATGCCAATCATTGAGGT
genomic: GAATCAAATACAGTCACAACCTTTTCCATACTGCTAGATGATGATTCATGgtcagctgtc ... cttaatgcagCATACCTTTTTCACTTGATGATATTGCAAAGACAATGCCAATCATTGAGGT
EST: gi|88419653|gb|CI686871.1|CI686871
EST:     GAATCAAATACAGTCACAACCTTTTCCATACTGCTAGATGATGATTCATG                         CATACCTTTTTCACTTGATGATATTGCAAAGACAATGCCAATCATTGAGGT
genomic: GAATCAAATACAGTCACAACCTTTTCCATACTGCTAGATGATGATTCATGgtcagctgtc ... cttaatgcagCATACCTTTTTCACTTGATGATATTGCAAAGACAATGCCAATCATTGAGGT
EST: gi|29628568|gb|CB633579.1|CB633579
EST:     GAATCAAATACAGTCACAACCTTTTCCATACTGCTAGATGATGATTCATG                         CATACCTTTTTCACTTGATGATATTGCAAAGACAATGCCAATCATTGAGGT
genomic: GAATCAAATACAGTCACAACCTTTTCCATACTGCTAGATGATGATTCATGgtcagctgtc ... cttaatgcagCATACCTTTTTCACTTGATGATATTGCAAAGACAATGCCAATCATTGAGGT
EST: gi|88408424|gb|CI685915.1|CI685915
EST:     GAATCAAATACAGTCACAACCTTTTCCATACTGCTAGATGATGATTCATG                         CATACCTTTTTCACTTGATGATATTGCAAAGACAATGCCAATCATTGAGGT
genomic: GAATCAAATACAGTCACAACCTTTTCCATACTGCTAGATGATGATTCATGgtcagctgtc ... cttaatgcagCATACCTTTTTCACTTGATGATATTGCAAAGACAATGCCAATCATTGAGGT
EST: gi|29629431|gb|CB634440.1|CB634440
EST:     GAATCAAATACAGTCACAACCTTTTCCATACTGCTAGATGATGATTCATG                         CATACCTTTTTCACTTGATGATATTGCAAAGACAATGCCAATCATTGAGGT
genomic: GAATCAAATACAGTCACAACCTTTTCCATACTGCTAGATGATGATTCATGgtcagctgtc ... cttaatgcagCATACCTTTTTCACTTGATGATATTGCAAAGACAATGCCAATCATTGAGGT
EST: gi|88370066|gb|CI680752.1|CI680752
EST:     GAATCAAATACAGTCACAACCTTTTCCATACTGCTAGATGATGATTCATG                         CATACCTTTTTCACTTGATGATATTGCAAAGACAATGCCAATCATTGAGGT
genomic: GAATCAAATACAGTCACAACCTTTTCCATACTGCTAGATGATGATTCATGgtcagctgtc ... cttaatgcagCATACCTTTTTCACTTGATGATATTGCAAAGACAATGCCAATCATTGAGGT