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gtcagctgtctgttacatttggatgaatgaattagtagcttttcagtttaggaccagagttctgatggctcatggttttacttgcttcgttacttaatgcagCATACCTTTTTCACTTGATGATATTGCAAAGACAATGCCAATCATTGAGGTGGCTGAAGATGATTTGCTACCTTTTGTTCGTGAAAACCCAAGCTTTGCG
species | Oryza sativa |
transcript | LOC_Os01g51630.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GAATCAAATACAGTCACAACCTTTTCCATACTGCTAGATGATGATTCATG CATACCTTTTTCACTTGATGATATTGCAAAGACAATGCCAATCATTGAGGTEST: gi|88419653|gb|CI686871.1|CI686871
genomic: GAATCAAATACAGTCACAACCTTTTCCATACTGCTAGATGATGATTCATGgtcagctgtc ... cttaatgcagCATACCTTTTTCACTTGATGATATTGCAAAGACAATGCCAATCATTGAGGT
EST: GAATCAAATACAGTCACAACCTTTTCCATACTGCTAGATGATGATTCATG CATACCTTTTTCACTTGATGATATTGCAAAGACAATGCCAATCATTGAGGTEST: gi|29628568|gb|CB633579.1|CB633579
genomic: GAATCAAATACAGTCACAACCTTTTCCATACTGCTAGATGATGATTCATGgtcagctgtc ... cttaatgcagCATACCTTTTTCACTTGATGATATTGCAAAGACAATGCCAATCATTGAGGT
EST: GAATCAAATACAGTCACAACCTTTTCCATACTGCTAGATGATGATTCATG CATACCTTTTTCACTTGATGATATTGCAAAGACAATGCCAATCATTGAGGTEST: gi|88408424|gb|CI685915.1|CI685915
genomic: GAATCAAATACAGTCACAACCTTTTCCATACTGCTAGATGATGATTCATGgtcagctgtc ... cttaatgcagCATACCTTTTTCACTTGATGATATTGCAAAGACAATGCCAATCATTGAGGT
EST: GAATCAAATACAGTCACAACCTTTTCCATACTGCTAGATGATGATTCATG CATACCTTTTTCACTTGATGATATTGCAAAGACAATGCCAATCATTGAGGTEST: gi|29629431|gb|CB634440.1|CB634440
genomic: GAATCAAATACAGTCACAACCTTTTCCATACTGCTAGATGATGATTCATGgtcagctgtc ... cttaatgcagCATACCTTTTTCACTTGATGATATTGCAAAGACAATGCCAATCATTGAGGT
EST: GAATCAAATACAGTCACAACCTTTTCCATACTGCTAGATGATGATTCATG CATACCTTTTTCACTTGATGATATTGCAAAGACAATGCCAATCATTGAGGTEST: gi|88370066|gb|CI680752.1|CI680752
genomic: GAATCAAATACAGTCACAACCTTTTCCATACTGCTAGATGATGATTCATGgtcagctgtc ... cttaatgcagCATACCTTTTTCACTTGATGATATTGCAAAGACAATGCCAATCATTGAGGT
EST: GAATCAAATACAGTCACAACCTTTTCCATACTGCTAGATGATGATTCATG CATACCTTTTTCACTTGATGATATTGCAAAGACAATGCCAATCATTGAGGT
genomic: GAATCAAATACAGTCACAACCTTTTCCATACTGCTAGATGATGATTCATGgtcagctgtc ... cttaatgcagCATACCTTTTTCACTTGATGATATTGCAAAGACAATGCCAATCATTGAGGT
ttaggaccagagttctgatggctcatggttttacttgcttcgttacttaatgcagCATACCTTTTTCACTTGATGATATTGCAAAGACAATGCCAATCATTGAGGTGGCTGAAGATGATTTGCTACCTTTTGTTCGTGAAAACCCAAGCTTTGCG
ttacttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagctgtctgttacatttggatgaatgaattagtagcttttcagtttaggaccagagttctgatggctcatggttttacttgcttcgttacttaatgcagCATACCTTTTTCACTTGATGATATTGCAAAGACAATGCCAATCATTGAGGTGGCTGAAGATGATTTGCTACCTTTTGTTCGTGAAAACCCAAGCTTTGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT