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...ttcaaagttcaaattatttgtgttatgctgtcaccccaaccatttatgttttcctgcacatctctgacccccactaatactgaacaatattgtgaatcagTGGAATGCCTGAGTGCAAACTTGGATTGAACGATAGGGTTCTTTTGGAGGCTCAAGGCCGAGCTACTAAAGGAAAAGCAATAGATCTTGATGATATTAAA
species | Oryza sativa |
transcript | LOC_Os01g50770.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATTGTGAGATCAGATGTTGTTGGGGCACTGAAGATGCGGACATATTTGAG TGGAATGCCTGAGTGCAAACTTGGATTGAACGATAGGGTTCTTTTGGAGGCEST: gi|163923569|gb|EG713310.1|EG713310
genomic: ATTGTGAGATCAGATGTTGTTGGGGCACTGAAGATGCGGACATATTTGAGgtgagcctac ... tgtgaatcagTGGAATGCCTGAGTGCAAACTTGGATTGAACGATAGGGTTCTTTTGGAGGC
EST: ATTGTGAGATCAGATGTTGTTGGGGCACTGAAGATGCGGACATATTTGAG TGGAATGCCTGAGTGCAAACTTGGATTGAACGATAGGGTTCTTTTGGAGGCEST: gi|33793248|gb|CF322504.1|CF322504
genomic: ATTGTGAGATCAGATGTTGTTGGGGCACTGAAGATGCGGACATATTTGAGgtgagcctac ... tgtgaatcagTGGAATGCCTGAGTGCAAACTTGGATTGAACGATAGGGTTCTTTTGGAGGC
EST: ATTGTGAGATCAGATGTTGTTGGGGCACTGAAGATGCGGACATATTTGAG TGGAATGCCTGAGTGCAAACTTGGATTGAACGATAGGGTTCTTTTGGAGGCEST: gi|58673470|gb|CK062156.1|CK062156
genomic: ATTGTGAGATCAGATGTTGTTGGGGCACTGAAGATGCGGACATATTTGAGgtgagcctac ... tgtgaatcagTGGAATGCCTGAGTGCAAACTTGGATTGAACGATAGGGTTCTTTTGGAGGC
EST: ATTGTGAGATCAGATGTTGTTGGGGCACTGAAGATGCGGACATATTTGAG TGGAATGCCTGAGTGCAAACTTGGATTGAACGATAGGGTACTTTTGGAGGC
genomic: ATTGTGAGATCAGATGTTGTTGGGGCACTGAAGATGCGGACATATTTGAGgtgagcctac ... tgtgaatcagTGGAATGCCTGAGTGCAAACTTGGATTGAACGATAGGGTTCTTTTGGAGGC
atgttttcctgcacatctctgacccccactaatactgaacaatattgtgaatcagTGGAATGCCTGAGTGCAAACTTGGATTGAACGATAGGGTTCTTTTGGAGGCTCAAGGCCGAGCTACTAAAGGAAAAGCAATAGATCTTGATGATATTAAA
cactaat putative branch site (score: 50)
aacaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcaaagttcaaattatttgtgttatgctgtcaccccaaccatttatgttttcctgcacatctctgacccccactaatactgaacaatattgtgaatcagTGGAATGCCTGAGTGCAAACTTGGATTGAACGATAGGGTTCTTTTGGAGGCTCAAGGCCGAGCTACTAAAGGAAAAGCAATAGATCTTGATGATATTAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - -ttgtgtt
- - - - - - - - - - - - -tgctgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gcacatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaacaat