1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TCTGGACATCAAGGGCCGCGTCCTCGTCTGGCGCGACTACCGCGGCGACGTCTCCGCCCTCCAGGCTGAGCGCTTCTTCACCAAGCTCCTCGACAAGGAGgtaagcgctcgcgcatcccggcctctctctatctcctcgtcctcgtaggatctatgtggctcgccggtggcgttgcgcgctaagctgatgtgaaccaacag
species | Oryza sativa |
transcript | LOC_Os01g50770.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCCAGGCTGAGCGCTTCTTCACCAAGCTCCTCGACAAGGAG GGCGACTCGGAGGCGCACTCGCCGGTGGTCTACGACGATGCCGGGGTCACCEST: gi|88742515|gb|CI766023.1|CI766023
genomic: TCCAGGCTGAGCGCTTCTTCACCAAGCTCCTCGACAAGGAGgtaagcgctc ... gaaccaacagGGCGACTCGGAGGCGCACTCGCCGGTGGTCTACGACGATGCCGGGGTCACC
EST: TCTCCGCCCTCCAGGCTGAGCGCTTCTTCACCAAGCTCCTCGACAAGGAG GGCGANTCGGAGEST: gi|88376945|gb|CI639270.1|CI639270
genomic: TCTCCGCCCTCCAGGCTGAGCGCTTCTTCACCAAGCTCCTCGACAAGGAGgtaagcgctc ... gaaccaacagGGCGACTCGGAG
EST: TCTCCGCCCTCCAGGCTGAGCGCTTCTTCACCAAGCTCCTCGACAAGGAG GGCGACTCGGAGGCGCACTCGCCGGTGGTCTANGACGATGCCGGGGTCACCEST: gi|88390289|gb|CI605742.1|CI605742
genomic: TCTCCGCCCTCCAGGCTGAGCGCTTCTTCACCAAGCTCCTCGACAAGGAGgtaagcgctc ... gaaccaacagGGCGACTCGGAGGCGCACTCGCCGGTGGTCTACGACGATGCCGGGGTCACC
EST: TCTCCGCCCTCCAGGCTGAGCGCTTCTTCACCAAGCTCCTCGACAAGGAG GGCGACTCGGAGGCGCACTCGCCGGTGGTCTATGACGATGCCGGGGTCACEST: gi|58665060|gb|CK053746.1|CK053746
genomic: TCTCCGCCCTCCAGGCTGAGCGCTTCTTCACCAAGCTCCTCGACAAGGAGgtaagcgctc ... gaaccaacagGGCGACTCGGAGGCGCACTCGCCGGTGGTCTACGACGATGCCGGGGTCAC
EST: TCTCCGCCCTCCAGGCTGAGCGCTTCTTCACCAAGCTCCTCGACAAGGAG GGCGACTCGGAGGCGCACTCGCCGGTGGTCTACGACGATGCCGGGGTCACC
genomic: TCTCCGCCCTCCAGGCTGAGCGCTTCTTCACCAAGCTCCTCGACAAGGAGgtaagcgctc ... gaaccaacagGGCGACTCGGAGGCGCACTCGCCGGTGGTCTACGACGATGCCGGGGTCACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTGGACATCAAGGGCCGCGTCCTCGTCTGGCGCGACTACCGCGGCGACGTCTCCGCCCTCCAGGCTGAGCGCTTCTTCACCAAGCTCCTCGACAAGGAGgtaagcgctcgcgcatcccggcctctctctatctcctcgtcctcgtaggatctatgtggctcgccggtggcgttgcgcgctaagctgatgtgaaccaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG