1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CTACATGTTCATCCAGCACAACAACGTGTTCCTACTAACCGCCTCCCGCCAGAACTGCAACGCCGCCAGCATCCTCCTCTTCCTCCACCGCGTCGTTGATgtacgtatacccaccctggatcctgggacgcagatgacatgttcagcgttcagtttgttcacgaagttggtttgtgcatgagtgcag
species | Oryza sativa |
transcript | LOC_Os01g50770.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCAACTGCAACGCCGCCAGCATCCTCCTCTTCCTCCACCGCGTCGTTGAT GTGTTCAAGCACTATTTCGAEST: gi|27576432|gb|CA999126.1|CA999126
genomic: G-AACTGCAACGCCGCCAGCATCCTCCTCTTCCTCCACCGCGTCGTTGATgtacgtatac ... atgagtgcagGTGTTCAAGCACTATTTCGA
EST: AGAACTGCAACGCCGCCAGCATCCTCCTCTTCCTCCACCGCGTCGTTGAT GTGTTCAAGCACTATTTCGAAGAGTTGGAGGAAGAGTCGCTGAGGGATAACEST: gi|33793248|gb|CF322504.1|CF322504
genomic: AGAACTGCAACGCCGCCAGCATCCTCCTCTTCCTCCACCGCGTCGTTGATgtacgtatac ... atgagtgcagGTGTTCAAGCACTATTTCGAAGAGTTGGAGGAAGAGTCGCTGAGGGATAAC
EST: AGAACTGCAACGCCGCCAGCATCCTCCTCTTCCTCCACCGCGTCGTTGAT GTGTTCAAGCACTATTTCGAAGAGTTGGAGGAAGAGTCGCTGAGGGATAACEST: gi|58673470|gb|CK062156.1|CK062156
genomic: AGAACTGCAACGCCGCCAGCATCCTCCTCTTCCTCCACCGCGTCGTTGATgtacgtatac ... atgagtgcagGTGTTCAAGCACTATTTCGAAGAGTTGGAGGAAGAGTCGCTGAGGGATAAC
EST: AGAACTGCAACGCCGCCAGCATCCTCCTCTTCCTCCACCGCGTCGTTGAT GTGTTCAAGCACTATTTCGAAGAGTTGGAGGAAGAGTCGCTGAGGGATAACEST: gi|58665060|gb|CK053746.1|CK053746
genomic: AGAACTGCAACGCCGCCAGCATCCTCCTCTTCCTCCACCGCGTCGTTGATgtacgtatac ... atgagtgcagGTGTTCAAGCACTATTTCGAAGAGTTGGAGGAAGAGTCGCTGAGGGATAAC
EST: AGAACTGCAACGCCGCCAGCATCCTCCTCTTCCTCCACCGCGTCGTTGAT GTGTTCAAGCACTATTTCGAAGAGTTGGAGGAAGAGTCGCTGAGGGATAAC
genomic: AGAACTGCAACGCCGCCAGCATCCTCCTCTTCCTCCACCGCGTCGTTGATgtacgtatac ... atgagtgcagGTGTTCAAGCACTATTTCGAAGAGTTGGAGGAAGAGTCGCTGAGGGATAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTACATGTTCATCCAGCACAACAACGTGTTCCTACTAACCGCCTCCCGCCAGAACTGCAACGCCGCCAGCATCCTCCTCTTCCTCCACCGCGTCGTTGATgtacgtatacccaccctggatcctgggacgcagatgacatgttcagcgttcagtttgttcacgaagttggtttgtgcatgagtgcag
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