Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcttatttgtcaatttaacaatgaccctgataggctacagcacatgcagagcaaatggttataccttcatattttcattcttcttcccgtttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATTTCAGCTGCGGTATAGCTGCTTCCATGTAATTAGCTGCAGGTTCGAACCT

Basic information

species Oryza sativa
transcript LOC_Os01g46980.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g46980.1 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G030167_T01 (Zea mays), 3'ss of exon 5
-tcttatttgtcaattt--aacaatgaccctgataggctacagcacatgcagagcaaatggttataccttcatattttcattcttcttcccgtttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATTTCAGCTGCGGTATAGCTGCTTCCATGTAATTAGCTGCAGGTT-CGAACCT------
  |  |     || | |  |    || |    ||  | |    |   | |   | ||||  |   |    ||  ||  ||   |    ||| |  |||||||||||||||||||||||||||| |||    | || |||||    ||      |    |   ||||  |||||||| |||||||  | ||| || | |   |||      
aaccaaagaaccattcttcagttttgtcagcaattagttgttacttttacgatgaaaatcttgccagaaccaagttaacacagt---ccccctgcccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCA------TCTGCCGATGGTACGGCTGCTTCTATGTAAT-GGTTGCCGGCTGCACGCCTGCACTG

upper sequence: LOC_Os01g46980.1 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G070360_T01 (Zea mays), 3'ss of exon 5
------------------------------------------------------------------------------------------tcttatttgtca-atttaacaatgaccctgataggcta-cagcacatgcagagcaaatggttataccttcatattttcattcttcttc-----ccgtttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATTTCAGCTG-CGGTATAGCT-GCTTCCATGTAAT--TAGCTGCAGGTTCGAACCT
                                                                                          | || ||| |   |   ||| ||    ||| |     | ||    ||    ||   ||    | | |||||||    ||   |    |      | |  |||||||||||||||||||||||||||| |||    | || ||||     ||   |    ||| ||  ||||| ||| ||||| |  || |  |   |||    | || |  
gtacctttggccatctcattttttcaatatacctgtatgaaaaccttttagcagtaacttgtcatttagttactgtaaaacaggtagagtttttttttataggagaaaaccattcttctgttttatgagcaattaattattagtttatcacgaaatcttcatagaaccaagttaacacaacgctcctacccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCA---ATCCGCAGATGATGGTATGGCTCGCTTCTACCTAGTGGTTTTTGCCAAATTGATCG-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33657535|gb|CF280149.1|CF280149
EST:     ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAG                         ATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
genomic: ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
EST: gi|88838687|gb|CI376225.1|CI376225
EST:     ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAG                         ATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
genomic: ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
EST: gi|7273928|gb|AU083472.1|AU083472
EST:     ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAG                         ATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
genomic: ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
EST: gi|7273929|gb|AU083473.1|AU083473
EST:     ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAG                         ATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
genomic: ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
EST: gi|86834128|gb|CI340267.1|CI340267
EST:     ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAG                         ATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
genomic: ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
EST: gi|88438154|gb|CI538513.1|CI538513
EST:     ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAG                         ATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
genomic: ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
EST: gi|88442420|gb|CI541627.1|CI541627
EST:     ACACACTTGATGCCAGGCTGGAAGTTTTCTTCCGCAAGAAATTACCGGAG                         ATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
genomic: ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
EST: gi|1632714|gb|C20443.1|C20443
EST:     CACATTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGGAG                         ATCCGGAAGCTTCTTTTTTGGTCAAG-GNACGGGCATAATCTGTGCATGT
genomic: CACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGG-AGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTT-GGTCAGGTG-ACGG-CATAATCTGTGCATGT
EST: gi|88483545|gb|CI420816.1|CI420816
EST:     ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAG                         ATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
genomic: ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
EST: gi|15846779|gb|BI795055.1|BI795055
EST:     ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAG                         ATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
genomic: ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
EST: gi|14981446|gb|BI306124.1|BI306124
EST:     ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAG                         ATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
genomic: ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
EST: gi|86851635|gb|CI315213.1|CI315213
EST:     ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAG                         ATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
genomic: ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
EST: gi|55433807|gb|CV730018.1|CV730018
EST:     ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAG                         ATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
genomic: ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
EST: gi|29639860|gb|CB644869.1|CB644869
EST:     ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAG                         ATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
genomic: ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
EST: gi|88509138|gb|CI436644.1|CI436644
EST:     ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAG                         ATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
genomic: ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
EST: gi|88273960|gb|CI394366.1|CI394366
EST:     ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAG                         ATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
genomic: ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
EST: gi|88455236|gb|CI516874.1|CI516874
EST:     ACACACTTGATGCCAGGCTGGAAGTTTTCTTCCGCAAGAAATTACCGGAG                         ATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
genomic: ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
EST: gi|33814329|gb|CF333037.1|CF333037
EST:     ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAG                         ATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
genomic: ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
EST: gi|88380190|gb|CI516177.1|CI516177
EST:     ACACACTTGATGCCAGGCTGGAANTTGTCTTCCGCAAGAAATTACCGGAG                         ATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
genomic: ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
EST: gi|14982055|gb|BI306733.1|BI306733
EST:     ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAG                         ATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
genomic: ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
EST: gi|8335323|gb|BE040307.1|BE040307
EST:     CTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAG                         ATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
genomic: CTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
EST: gi|88456662|gb|CI544599.1|CI544599
EST:     ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAG                         ATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
genomic: ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
EST: gi|88458856|gb|CI555537.1|CI555537
EST:     ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAG                         ATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
genomic: ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
EST: gi|88283638|gb|CI405084.1|CI405084
EST:     ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAG                         ATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
genomic: ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
EST: gi|88365225|gb|CI540537.1|CI540537
EST:     ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAG                         ATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
genomic: ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
EST: gi|11565291|gb|AU165927.1|AU165927
EST:     ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAG                         ATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
genomic: ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
EST: gi|33817964|gb|CF334810.1|CF334810
EST:     ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAG                         ATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
genomic: ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
EST: gi|86598255|gb|CI354872.1|CI354872
EST:     ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAG                         ATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
genomic: ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
EST: gi|33685153|gb|CF313392.1|CF313392
EST:     ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAG                         ATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
genomic: ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
EST: gi|700686|gb|D46977.1|D46977
EST:     CACA-TNTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAG                         ATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
genomic: CACACT-TGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
EST: gi|87031002|gb|CI270150.1|CI270150
EST:     ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAG                         ATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
genomic: ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
EST: gi|88380927|gb|CI523498.1|CI523498
EST:     ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAG                         ATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
genomic: ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
EST: gi|56550170|gb|CX056274.1|CX056274
EST:     ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAG                         ATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
genomic: ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
EST: gi|89170567|gb|CI039844.1|CI039844
EST:     ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAG                         ATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
genomic: ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
EST: gi|33657103|gb|CF279717.1|CF279717
EST:     ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAG                         ATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
genomic: ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
EST: gi|11442549|gb|BF430452.1|BF430452
EST:     ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAG                         ATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
genomic: ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
EST: gi|56158220|gb|C74678.2|C74678
EST:     ANACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAG                         ATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
genomic: ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
EST: gi|33657947|gb|CF280561.1|CF280561
EST:     ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAG                         ATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
genomic: ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
EST: gi|8858736|gb|AU096054.1|AU096054
EST:     ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAG                         ATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
genomic: ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
EST: gi|33654531|gb|CF277145.1|CF277145
EST:     ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAG                         ATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
genomic: ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
EST: gi|7273805|gb|AU083349.1|AU083349
EST:     ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAG                         ATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
genomic: ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
EST: gi|88288221|gb|CI515365.1|CI515365
EST:     ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAG                         ATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
genomic: ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
EST: gi|33800740|gb|CF326240.1|CF326240
EST:     ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAG                         ATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
genomic: ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
EST: gi|86251532|gb|CI016821.1|CI016821
EST:     ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAG                         ATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
genomic: ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
EST: gi|88546389|gb|CI476022.1|CI476022
EST:     ACACACTTGATGCCAGGCTNGAAGTTTTCTTCCGCAAGAAATTACCGGAG                         ATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
genomic: ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
EST: gi|88374382|gb|CI513469.1|CI513469
EST:     ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAG                         ATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
genomic: ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
EST: gi|88291198|gb|CI527588.1|CI527588
EST:     ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAG                         ATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
genomic: ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
EST: gi|33691600|gb|CF319839.1|CF319839
EST:     ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAG                         ATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
genomic: ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
EST: gi|33671066|gb|CF299305.1|CF299305
EST:     ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAG                         ATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
genomic: ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
EST: gi|33794426|gb|CF323097.1|CF323097
EST:     ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAG                         ATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
genomic: ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
EST: gi|33817923|gb|CF334790.1|CF334790
EST:     ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAG                         ATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
genomic: ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
EST: gi|88439985|gb|CI543902.1|CI543902
EST:     ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAG                         ATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
genomic: ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
EST: gi|86603137|gb|CI357501.1|CI357501
EST:     ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAG                         ATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTG-GCATGTAATT
genomic: ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
EST: gi|88455086|gb|CI516724.1|CI516724
EST:     ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAG                         ATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
genomic: ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
EST: gi|88365186|gb|CI540498.1|CI540498
EST:     ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAG                         ATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
genomic: ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
EST: gi|87008526|gb|CI314984.1|CI314984
EST:     ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAG                         ATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
genomic: ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
EST: gi|86599044|gb|CI355661.1|CI355661
EST:     ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAG                         ATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
genomic: ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
EST: gi|55413690|gb|CV726066.1|CV726066
EST:     ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAG                         ATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT
genomic: ACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 71 (downstream exon)
Score: 195

CTCTGGAGGTGTTGTGCTGGCTTCTCGAGATGGAAAGATTGTGTGTGAGAACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgt ... ttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATTTCAGCTGCGGTATAGCTGCTTCCATGTAATTAGCTGCAGGTTCGAACCT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcagagcaaatggttataccttcatattttcattcttcttcccgtttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATTTCAGCTGCGGTATAGCTGCTTCCATGTAATTAGCTGCAGGTTCGAACCT
                taccttcatattttca  CT-rich tract
                    ttcatattttcatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tcttatttgtcaatttaacaatgaccctgataggctacagcacatgcagagcaaatggttataccttcatattttcattcttcttcccgtttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATTTCAGCTGCGGTATAGCTGCTTCCATGTAATTAGCTGCAGGTTCGAACCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - ctacagc
- - - - - - - - - - - - - - - - - - - - -acatgca
- - - - - - - - - - - - - - - - - - - - - - - - - gcaaatg