1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgattgcttgttagcataggtttcatagaatccacctgtatcactatttctgggtttatccatttgttaactgatgaggccttgttttctcctttatcagTGAGTACTCTATGCAGCTGAATGCTTCTCGCATCAAAGTGCTTCAAGCTCAGGATGATTTGGTTAATTCCATGAAAGAGGATGCTACAAAGCAACTCCTG
species | Oryza sativa |
transcript | LOC_Os01g46980.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGGCAAGAATATGAACGGAAAGAGAAGCAAGTCGAAGTTAGAAAGAAAAT TGAGTACTCTATGCAGCTGAATGCTTCTCGCATCAAAGTGCTTCAAGCTCAEST: gi|40486588|gb|BX898040.1|BX898040
genomic: AGGCAAGAATATGAACGGAAAGAGAAGCAAGTCGAAGTTAGAAAGAAAATgtgagacttc ... cctttatcagTGAGTACTCTATGCAGCTGAATGCTTCTCGCATCAAAGTGCTTCAAGCTCA
EST: AGGCAAGAATATGAACGGAAAGAGAAGCAAGTCGAAGTTAGAAAGAAAAT TGAGTACTCTAAGCAACTGAATGCTTCTCGCATCAAAGTGCTTCAAGCTCAEST: gi|56550159|gb|CX056263.1|CX056263
genomic: AGGCAAGAATATGAACGGAAAGAGAAGCAAGTCGAAGTTAGAAAGAAAATgtgagacttc ... cctttatcagTGAGTACTCTATGCAGCTGAATGCTTCTCGCATCAAAGTGCTTCAAGCTCA
EST: AAGCAAGTCGAAGTTAGAAAGAAAAT TGAGTACTCTATGCAGCTGAATGCTTCTCGCATCAAAGTGCTTCAAGCTCAEST: gi|58593493|gb|CF991801.1|CF991801
genomic: AAGCAAGTCGAAGTTAGAAAGAAAATgtgagacttc ... cctttatcagTGAGTACTCTATGCAGCTGAATGCTTCTCGCATCAAAGTGCTTCAAGCTCA
EST: AGGCAAGAATATGAACGGAAAGAGAAGCAAGTCGAAGTTAGAAAGAAAAT TGAGTACTCTATGCAACTGAATGCTTCTCGCATCAAAGTGCTTCAAGCTCAEST: gi|29639860|gb|CB644869.1|CB644869
genomic: AGGCAAGAATATGAACGGAAAGAGAAGCAAGTCGAAGTTAGAAAGAAAATgtgagacttc ... cctttatcagTGAGTACTCTATGCAGCTGAATGCTTCTCGCATCAAAGTGCTTCAAGCTCA
EST: AGGCAAGAATATGAACGGAAAGAGAAGCAAGTCGAAGTTAGAAAGAAAAT TGAGTACTCTATGCAGCTGAATGCTTCTCGCATCAAAGTGCTTCAAGCTCAEST: gi|218488190|gb|FG970074.1|FG970074
genomic: AGGCAAGAATATGAACGGAAAGAGAAGCAAGTCGAAGTTAGAAAGAAAATgtgagacttc ... cctttatcagTGAGTACTCTATGCAGCTGAATGCTTCTCGCATCAAAGTGCTTCAAGCTCA
EST: AGGCAAGAATATGAACGGAAAGAGAAGCAAGTCGAAGTTAGAAAGAAAAT TGAGTACTCTATGCAACTGAATGCTTCTCGCATCAAAGTGCTTCAAGCTCAEST: gi|58604131|gb|CK014659.1|CK014659
genomic: AGGCAAGAATATGAACGGAAAGAGAAGCAAGTCGAAGTTAGAAAGAAAATgtgagacttc ... cctttatcagTGAGTACTCTATGCAGCTGAATGCTTCTCGCATCAAAGTGCTTCAAGCTCA
EST: AGGCAAGAATATGAACGGAAAGAGAAGCAAGTCGAAGTTAGAAAGAAAAT TGAGTACTCTATGCAACTGAATGGTTCTCGCATCAAAGTGCTTCAAGCTCAEST: gi|58586214|gb|CF984522.1|CF984522
genomic: AGGCAAGAATATGAACGGAAAGAGAAGCAAGTCGAAGTTAGAAAGAAAATgtgagacttc ... cctttatcagTGAGTACTCTATGCAGCTGAATGCTTCTCGCATCAAAGTGCTTCAAGCTCA
EST: AGGCAAGAATATGAACGGAAAGAGAAGCAAGTCGAAGTTAGAAAGAAAAT TGAGTACTCTATGCAACTGAATGCTTCTCGCATCAAAGTGCTTCAAGCTCAEST: gi|55411972|gb|CV724348.1|CV724348
genomic: AGGCAAGAATATGAACGGAAAGAGAAGCAAGTCGAAGTTAGAAAGAAAATgtgagacttc ... cctttatcagTGAGTACTCTATGCAGCTGAATGCTTCTCGCATCAAAGTGCTTCAAGCTCA
EST: AGAGAAGCAAGTCGAAGTTAGAAAGAAAAT TGAGTACTCTATGCAGCTGAATGCTTCTCGCATCAAAGTGCTTCAAGCTCAEST: gi|58594166|gb|CF992474.1|CF992474
genomic: AGAGAAGCAAGTCGAAGTTAGAAAGAAAATgtgagacttc ... cctttatcagTGAGTACTCTATGCAGCTGAATGCTTCTCGCATCAAAGTGCTTCAAGCTCA
EST: AGGCAAGAATATGAACGGAAAGAGAAGCAAGTCGAAGTTAGAAAGAAAAT TGAGTACTCTATGCAACTGAATGCTTCTCGCATCAAAGTGCTTCAAGCTCAEST: gi|88392356|gb|CI612830.1|CI612830
genomic: AGGCAAGAATATGAACGGAAAGAGAAGCAAGTCGAAGTTAGAAAGAAAATgtgagacttc ... cctttatcagTGAGTACTCTATGCAGCTGAATGCTTCTCGCATCAAAGTGCTTCAAGCTCA
EST: AGGCAAGAATATGAACGGAAAGAGAAGCAAGTCGAAGTTAGAAAGAAAAT TGAGTACTCTATGCAGCTGAATGCTTCTCGCATCAAAGTGCTTCAAGCTCAEST: gi|2310524|gb|C26679.1|C26679
genomic: AGGCAAGAATATGAACGGAAAGAGAAGCAAGTCGAAGTTAGAAAGAAAATgtgagacttc ... cctttatcagTGAGTACTCTATGCAGCTGAATGCTTCTCGCATCAAAGTGCTTCAAGCTCA
EST: AGGCAAGAATATGAACGGAAAGAGAAGCAAGTCGAAGTTAGAAAGAAAAT TGAGTACTCTATGCAGCTGAATGCTTTCTCGCATCAAAGTGCTTCAAGCTCEST: gi|33657536|gb|CF280150.1|CF280150
genomic: AGGCAAGAATATGAACGGAAAGAGAAGCAAGTCGAAGTTAGAAAGAAAATgtgagacttc ... cctttatcagTGAGTACTCTATGCAGCTGAATGCTT-CTCGCATCAAAGTGCTTCAAGCTC
EST: AGGCAAGAATATGAACGGAAAGAGAAGCAAGTCGAAGTTAGAAAGAAAAT TGAGTACTCTATGCAGCTGAATGCTTCTCGCATCAAAGTGCTTEST: gi|33688006|gb|CF316245.1|CF316245
genomic: AGGCAAGAATATGAACGGAAAGAGAAGCAAGTCGAAGTTAGAAAGAAAATgtgagacttc ... cctttatcagTGAGTACTCTATGCAGCTGAATGCTTCTCGCATCAAAGTGCTT
EST: AGGCAAGAATATGAACGGAAAGAGAAGCAAGTCGAAGTTAGAAAGAAAAT TGAGTACTCTATGCAGCTGAATGCTTCTCGCATCAAAGTGCTTCAAGCTCA
genomic: AGGCAAGAATATGAACGGAAAGAGAAGCAAGTCGAAGTTAGAAAGAAAATgtgagacttc ... cctttatcagTGAGTACTCTATGCAGCTGAATGCTTCTCGCATCAAAGTGCTTCAAGCTCA
atttctgggtttatccatttgttaactgatgaggccttgttttctcctttatcagTGAGTACTCTATGCAGCTGAATGCTTCTCGCATCAAAGTGCTTCAAGCTCAGGATGATTTGGTTAATTCCATGAAAGAGGATGCTACAAAGCAACTCCTG
ccttgttttctccttt CT-rich tract
atttgttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgattgcttgttagcataggtttcatagaatccacctgtatcactatttctgggtttatccatttgttaactgatgaggccttgttttctcctttatcagTGAGTACTCTATGCAGCTGAATGCTTCTCGCATCAAAGTGCTTCAAGCTCAGGATGATTTGGTTAATTCCATGAAAGAGGATGCTACAAAGCAACTCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- -ttgcttg
- - - - - - - - - - - - - - - - - -ctgtatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgatga