1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tcaaaccagataaaccactatgcctttatcattgctgacagttggttaaccattctgatttccttccatatgttaacttatttgtataatgtgtttgcagGAGTTCAATATTGAGAAGCTTCAACTTGTTGAAGCTGAGAAAAAGAAGATCAGGCAAGAATATGAACGGAAAGAGAAGCAAGTCGAAGTTAGAAAGAAAA
species | Oryza sativa |
transcript | LOC_Os01g46980.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCAGGAGGCCGAGGAGAAGGCCAGCGAGATCTCCGTCTCCGCCGAGGAG GAGTTCAATATTGAGAAGCTTCAACTTGTTGAAGCTGAGAAAAAGAAGATCEST: gi|40486588|gb|BX898040.1|BX898040
genomic: GCCAGGAGGCCGAGGAGAAGGCCAGCGAGATCTCCGTCTCCGCCGAGGAGgtcagtactt ... gtgtttgcagGAGTTCAATATTGAGAAGCTTCAACTTGTTGAAGCTGAGAAAAAGAAGATC
EST: GGCCGGGGAGAAGG-CAGCGAGATCTCCGTCTCCGCCGAGGAG GAG-TCAATATTGAGAAGCTTCAACTTGTTGAAGCTGAGAAAAAGAAGATCEST: gi|58593493|gb|CF991801.1|CF991801
genomic: GGCCGAGGAGAAGGCCAGCGAGATCTCCGTCTCCGCCGAGGAGgtcagtactt ... gtgtttgcagGAGTTCAATATTGAGAAGCTTCAACTTGTTGAAGCTGAGAAAAAGAAGATC
EST: GCCAGGAGGCCGAGGAGAAGGCCAGCGAGATCTCCGTCTCCGCCGAGGAG GAGTTCAATATTGAGAAGCTTCAACTTGTTGAAGCTGAGAAAAAGAAGATCEST: gi|218488190|gb|FG970074.1|FG970074
genomic: GCCAGGAGGCCGAGGAGAAGGCCAGCGAGATCTCCGTCTCCGCCGAGGAGgtcagtactt ... gtgtttgcagGAGTTCAATATTGAGAAGCTTCAACTTGTTGAAGCTGAGAAAAAGAAGATC
EST: GCCAGGAGGCCGAGGAGAAGGCCAGCGAGATCTCCGTCTCCGCCGAGGAG GAGTTCAATATTGAGAAGCTTCAACTTGTTGAAGCTGAGAAAAAGAAGATCEST: gi|58604131|gb|CK014659.1|CK014659
genomic: GCCAGGAGGCCGAGGAGAAGGCCAGCGAGATCTCCGTCTCCGCCGAGGAGgtcagtactt ... gtgtttgcagGAGTTCAATATTGAGAAGCTTCAACTTGTTGAAGCTGAGAAAAAGAAGATC
EST: GCCAGGAGGCCGAGGAGAAGGCCAGCGAGATCTCCGTCTCCGCCGAGGAG GAGTTCAATATTGAGAAGCTTCAACTTGTTGAAGCTGAGAAAAAGAAGATCEST: gi|58586214|gb|CF984522.1|CF984522
genomic: GCCAGGAGGCCGAGGAGAAGGCCAGCGAGATCTCCGTCTCCGCCGAGGAGgtcagtactt ... gtgtttgcagGAGTTCAATATTGAGAAGCTTCAACTTGTTGAAGCTGAGAAAAAGAAGATC
EST: GCCAGGAGGCCGAGGAGAAGGCCAGCGAGATCTCCGTCTCCGGCGAGGAG GAGTTCAATATTGAGAAGCTTCAACTTGTTGAAGCTGAGAAAAAGAAGATCEST: gi|58594166|gb|CF992474.1|CF992474
genomic: GCCAGGAGGCCGAGGAGAAGGCCAGCGAGATCTCCGTCTCCGCCGAGGAGgtcagtactt ... gtgtttgcagGAGTTCAATATTGAGAAGCTTCAACTTGTTGAAGCTGAGAAAAAGAAGATC
EST: GCCAGGAGGCCGAGGAGAAGGCCAGCGAGATCTCCGTCTCCGGCGAGGAG GAGTTCAATATTGAGAAGCTTCAACTTGTTGAAGCTGAGAAAAAGAAGATCEST: gi|88392356|gb|CI612830.1|CI612830
genomic: GCCAGGAGGCCGAGGAGAAGGCCAGCGAGATCTCCGTCTCCGCCGAGGAGgtcagtactt ... gtgtttgcagGAGTTCAATATTGAGAAGCTTCAACTTGTTGAAGCTGAGAAAAAGAAGATC
EST: GCCAGGAGGCCGAGGAGAAGGCCAGCGAGATCTCCGTCTCCGCCGAGGAG GAGTTCAATATTGAGAAGCTTCAACTTGTTGAAGCTGAGAAAAAGAAGATCEST: gi|2310524|gb|C26679.1|C26679
genomic: GCCAGGAGGCCGAGGAGAAGGCCAGCGAGATCTCCGTCTCCGCCGAGGAGgtcagtactt ... gtgtttgcagGAGTTCAATATTGAGAAGCTTCAACTTGTTGAAGCTGAGAAAAAGAAGATC
EST: GCCAGGAGGCCGAGGAGAAGGCCAGCNAGATCTCCGTCTCCGCCGAGGAG GAGTTCAATATTGAGAAGCTTCAACTTGTTGAAGCTGAGAAAAAGAAGATCEST: gi|33657536|gb|CF280150.1|CF280150
genomic: GCCAGGAGGCCGAGGAGAAGGCCAGCGAGATCTCCGTCTCCGCCGAGGAGgtcagtactt ... gtgtttgcagGAGTTCAATATTGAGAAGCTTCAACTTGTTGAAGCTGAGAAAAAGAAGATC
EST: GCCAGGAGGCCGATGATAAGGCCAGCGAGATCTCCGTCTCCGCCGAGGAG GAGTTCAATATTGAGAAGCTTCAACTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGAGGAGAAGGCCAGCGAGATCTCCGTCTCCGCCGAGGAGgtcagtactt ... gtgtttgcagGAGTTCAATATTGAGAAGCTTCAACTTGTTGAAGCTGAGAAAAAGAAGATC
ttaaccattctgatttccttccatatgttaacttatttgtataatgtgtttgcagGAGTTCAATATTGAGAAGCTTCAACTTGTTGAAGCTGAGAAAAAGAAGATCAGGCAAGAATATGAACGGAAAGAGAAGCAAGTCGAAGTTAGAAAGAAAA
tgttaac putative branch site (score: 100)
atatgttaacttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaaaccagataaaccactatgcctttatcattgctgacagttggttaaccattctgatttccttccatatgttaacttatttgtataatgtgtttgcagGAGTTCAATATTGAGAAGCTTCAACTTGTTGAAGCTGAGAAAAAGAAGATCAGGCAAGAATATGAACGGAAAGAGAAGCAAGTCGAAGTTAGAAAGAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
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- aaaccag
- - - - - - - - -ctatgcc
- - - - - - - - - - - - - - - - tgctgac