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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACGACGCCGATGTCGCCAAGCAGATCCAGCAGATGGTGCGGTTCATCCGCCAGGAGGCCGAGGAGAAGGCCAGCGAGATCTCCGTCTCCGCCGAGGAGgtcagtacttacccctcccctcgcctcgcctctcccccgcgcgtcgaagcttcgggaagcctctcgatccgcgcctccgaagcttttcacccgcccgatc...

Basic information

species Oryza sativa
transcript LOC_Os01g46980.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g46980.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G030167_T01 (Zea mays), 5'ss of exon 1
GAACGACGCCGATGTCGCCAAGCAGATCCAGCAGATGGTGCGGTTCATCCGCCAGGAGGCCGAGGAGAAGGCCAGCGAGATCTCCGTCTCCGCCGAGGAGgtcagtacttacccctcccctcgcctcgcctctcccccgcgcgtcgaagcttcgggaagcctctcgatccgcgcctccgaagcttttcacccgcccgatc----------
||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||  ||||||  ||   ||| ||  | | | ||      | ||||||||  ||||| ||| ||| |  | ||| | |   | ||| | ||||||||          
GAATGACGCCGATGTATCCAAGCAGATCCAGCAGATGGTGCGGTTCATCCGCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagt--ttaccctgcctgccgcttcctcaccctcc------tagaagcttccagaagcttctagatgcttgtctctgta--ctctcagctgcccgatctggctgacgc

upper sequence: LOC_Os01g46980.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G070360_T01 (Zea mays), 5'ss of exon 1
GAACGACGCCGATGTCGCCAAGCAGATCCAGCAGATGGTGCGGTTCATCCGCCAGGAGGCCGAGGAGAAGGCCAGCGAGATCTCCGTCTCCGCCGAGGAGgtcagtacttacccctcccctcgcctcgcctctcccccgcgcgtcgaagcttcgggaagcctctcgatccgcgcctccgaagcttttcacccgcccgatc----------
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||         | || ||||  |  ||  | | | | | | ||||||||  |||||| || |||    ||||| | |   ||||| | |||||||           
GAATGACGCCGATGTAGCCAAGCAGATCCAGCAGATGGTGCGGTTCATCCGCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagt--------tttccttcgctgccgcttcctcaccctcctagaagcttccagaagcccctagatggttgcctctgta--ctttcagctgcccgatgtggctggcgc

upper sequence: LOC_Os01g46980.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA08G02420.1 (Glycine max), 5'ss of exon 1
GAACGACGCCGATGTCGCCAAGCAGATCCAGCAGATGGTGCGGTTCATCCGCCAGGAGGCCGAGGAGAAGGCCAGCGAGATCTCCGTCTCCGCCGAGGAGgtcagtacttacccctcccctcgcctcgcctctcccccgcgcgtcgaagcttcgggaagcctctcgatccgcgcctccgaagcttttcacccgcccgatc
||||||||| || ||| | ||||| |||||||||||||| ||||||||||||||||| || ||||| || ||||  |||||||| ||||||||||| |||||   |  | |   | ||  |   |||  || ||  |  | | |  | |||     |    |    |      | || | ||                  
GAACGACGCAGACGTCTCAAAGCAAATCCAGCAGATGGTTCGGTTCATCCGCCAGGAAGCTGAGGAAAAAGCCAATGAGATCTCTGTCTCCGCCGAAGAGgtttctcttcatttcaccattt-tctcctctttcgtctcc-cattcatgctctaaaactgattcgtacttttccttctgcag------------------

upper sequence: LOC_Os01g46980.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA05G37150.1 (Glycine max), 5'ss of exon 1
GAACGACGCCGATGTCGCCAAGCAGATCCAGCAGATGGTGCGGTTCATCCGCCAGGAGGCCGAGGAGAAGGCCAGCGAGATCTCCGTCTCCGCCGAGGAGgtcagtacttacccctcccctcgcctcgcctctcccccgcgcgtcgaagcttcgggaagcctctcgatccgcgcctccgaagcttttcacccgcccgatc
||||||||| |||||| | ||||| |||||||||||||||| ||||||||||||||| || ||||| ||||||| ||||||||| ||||||||||| |||||   | |||       || |   ||| ||| | |    |   |  | |||       |  || |  |   | | || | ||                  
GAACGACGCAGATGTCTCAAAGCAAATCCAGCAGATGGTGCAGTTCATCCGCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAGgt---ttcttcatttcaccattttctc-ccttttcgtttccaattcatgctctaaacggagtcgcacttttc-cttctgcag------------------

upper sequence: LOC_Os01g46980.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA05G37160.1 (Glycine max), 5'ss of exon 1
GAACGACGCCGATGTCGCCAAGCAGATCCAGCAGATGGTGCGGTTCATCCGCCAGGAGGCCGAGGAGAAGGCCAGCGAGATCTCCGTCTCCGCCGAGGAGgtcagtacttacccctcccctcgcctcgcctctcccccgcgcgtcgaagcttcgggaagcctctcgatccgcgcctccgaagcttttcacccgcccgatc
||||||||| |||||| | ||||| |||||||||||||||||||||||||||||||| || ||||| ||||||| ||||||||| ||||||||||| |||||   | |||       || |  ||||  || ||     |   |  | |||     | |       |      | || | ||                  
GAACGACGCAGATGTCTCGAAGCAAATCCAGCAGATGGTGCGGTTCATCCGCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAGgt---ttcttcatttcgccatttcctcctctttcgttt-caaattcatgctcttaaacggaatcgtacttttccttctgcag------------------

upper sequence: LOC_Os01g46980.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA08G02390.2 (Glycine max), 5'ss of exon 1
GAACGACGCCGATGTCGCCAAGCAGATCCAGCAGATGGTGCGGTTCATCCGCCAGGAGGCCGAGGAGAAGGCCAGCGAGATCTCCGTCTCCGCCGAGGAGgtcagtacttacccctcccctcgcctcgcctctcccccgcgcgtcgaagcttcgggaagcctctcgatccgcgcctccgaagcttttcacccgcccgatc
||||||||| |||||| | ||||| ||||||||||||||||| |||||||||||||| || |||||||| |||| ||||||||| || || ||||| |||||   |  | |   |    |   |  |   |  ||| |   |||||    |||     |  ||    |   | | || | ||                  
GAACGACGCAGATGTCTCGAAGCAAATCCAGCAGATGGTGCGTTTCATCCGCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttctcttcatttcattaccttcaccattttcccctctttcgtcg--ttttcaaactgaatcgtacttttc-cttctgcag------------------

upper sequence: LOC_Os01g46980.1 (Oryza sativa), 5'ss of exon 1
lower sequence: AT1G64200.1 (Arabidopsis thaliana), 5'ss of exon 1
GAACGACGCCGATGTCGCCAAGCAGATCCAGCAGATGGTGCGGTTCATCCGCCAGGAGGCCGAGGAGAAGGCCAGCGAGATCTCCGTCTCCGCCGAGGAGgtcagtacttacccctcccctcgcctcgcctctcccccgcgcgtcgaagcttcgggaagcctctcgatccgcgcctccgaagcttttcacccgcccgatc----
||||||||||||||   |||  |||||||||||||||||  |||| ||||||||||| ||||| || ||||| | |||||||||| ||||| | || || || ||| | |||   |  | ||  ||| | | |   |      |  | |  |  |  |  || | ||     || |  ||   ||||     |  |  |     
GAACGACGCCGATGCTTCCATCCAGATCCAGCAGATGGTTAGGTTTATCCGCCAGGAAGCCGAAGAAAAGGCTAACGAGATCTCCATCTCCTCTGAAGAAgtaagtccataca--ttacatccactctcttttgatctcgatctttacgaatacgtgactctgttgacaattgcgt--gactattttggtttgttcttttgaaa

upper sequence: LOC_Os01g46980.1 (Oryza sativa), 5'ss of exon 1
lower sequence: Vv02s0025g01000.t01 (Vitis vinifera), 5'ss of exon 1
GAACGACGCCGATGTCGCCAAGCAGATCCAGCAGATGGTGCGGTTCATCCGCCAGGAGGCCGAGGAGAAGGCCAGCGAGATCTCCGTCTCCGCCGAGGAGgtcag--tacttacccctcccctcgcctcgcctctcccccgcgcgtcga--agcttcgggaagcctctcga---tccgcgcctccgaagcttttcacccgcccgatc
||||||||| |||||| ||||||||||||||||||||||| | ||||||||||| || || ||||| ||||| |  || ||||| || |||||||| || || ||  |||| || |         |      | | | |  ||  |||    |     ||||    |  ||   || | |      ||     | |           
GAACGACGCAGATGTCTCCAAGCAGATCCAGCAGATGGTGAGATTCATCCGCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAAgtaagcctactcactcaaatgtgtactctcttttttctcttcggatcgtttggtgctaggaaattgcaagaaaatcagaggaaggaaaaaaaattaaaaa-------

upper sequence: LOC_Os01g46980.1 (Oryza sativa), 5'ss of exon 1
lower sequence: EDP03505 (Chlamydomonas reinhardtii), 5'ss of exon 2
GAACGACGCCGATGTCGCCAAGCAGATCCAGCAGATGGTGCGGTTCATCCGCCAGGAGGCCGAGGAGAAGGCCAGCGAGATCTCCGTCTCCGCCGAGGAGgtcagtacttacccctcccc------tcgcctcgcctctcccccgcgcgtcgaagcttcgggaagcctctcgatccgcgcctccgaagcttttcacccgcccgatc
             ||||    ||| ||  ||||||||||||||||||||   |||||||| ||||||||| ||| ||||||    ||||| || |||||||  ||| |    ||   | |      ||     || ||| | || |        |||  ||   |  |   | |    ||  ||   |   | ||    ||     
-------------GTCGAGCGGCAAATTGAGCAGATGGTGCGGTTCATCAAGCAGGAGGCGGAGGAGAAGTCCAACGAGATTAAGGTCTCGGCTGAGGAGgcaagtgcagggccagacacagaggatcaatcagcttcttcaccactttattctgctggggttggtgttatg-ttgttgctgcctcgggcatgcaagttcc-----

upper sequence: LOC_Os01g46980.1 (Oryza sativa), 5'ss of exon 1
lower sequence: PP1S269_14V6.3 (Physcomitrella patens), 5'ss of exon 1
GAACGACGCCGATGTCGCCAAGCAGATCCAGCAGATGGTGCGGTTCATCCGCCAGGAGGCCGAGGAGAAGGCCAGCGAGATCTCCGTCTCCGCCGAGGAGgt-----cagtacttacccctcccctcgcctcgcctctcccccgcgcgtcgaagcttcgggaagcctctcgatccgcgcctccgaagcttttcacccgcccgatc
|||||||   || ||| | |||||| | |||||| |||||| ||| ||||||||||| || ||||||||||| |  ||||| || || || || ||||||||     ||  || | |||  ||  |    |    | |          |      ||   |   |||   | | | |   |    ||    ||  |   |     
GAACGACTTGGAGGTCTCGAAGCAGGTGCAGCAGTTGGTGCAGTTTATCCGCCAGGAAGCGGAGGAGAAGGCTAATGAGATTTCAGTTTCGGCTGAGGAGgtacttccatcacgt-cccagccttttttttttttttttttttttttttttcgtttttttgtttcctgcagtttctcttgtgatgaggcactcgtcaatca----

upper sequence: LOC_Os01g46980.1 (Oryza sativa), 5'ss of exon 1
lower sequence: PP1S269_15V6.1 (Physcomitrella patens), 5'ss of exon 1
GAACGACGCCGATGTCGCCAAGCAGATCCAGCAGATGGTGCGGTTCATCCGCCAGGAGGCCGAGGAGAAGGCCAGCGAGATCTCCGTCTCCGCCGAGGAGgtcagtacttacccctcccctcgcctcgcctctcccccgcgcgtcgaagcttcgggaagcctctcgatccgcgcctccgaagcttttcacccgcccgatc---
|||||||   || ||  |  ||||  ||||||||||||||| |||||| |||||||| || |||||||||||||  |||||||| || || ||||||||||| ||     | |   | ||| |  || |  |   | ||   |   | | ||    | |    |  ||| |       |||      |  |    |||     
GAACGACATGGAGGTTTCGCAGCAAGTCCAGCAGATGGTGCAGTTCATACGCCAGGAAGCGGAGGAGAAGGCCAATGAGATCTCTGTATCTGCCGAGGAGgtaaga--ccatcaggctccttgaatc-caccgggcacgtttgcaaatgtttttataggggagtttatctgttttggagaattcggacctcgaatcgacgttg

upper sequence: LOC_Os01g46980.1 (Oryza sativa), 5'ss of exon 1
lower sequence: PP1S68_127V6.1 (Physcomitrella patens), 5'ss of exon 1
GAACGACGCCGATGTCGCCAAGCAGATCCAGCAGATGGTGCGGTTCATCCGCCAGGAGGCCGAGGAGAAGGCCAGCGAGATCTCCGTCTCCGCCGAGGAGgtcag--tacttacccctcccctcgcctcgcctctcccccgcgcgtcgaagcttcgggaagcctctcgatccgcgcctccgaagcttttcacccgcccgatc
|||||||   || ||  | |||||| ||||||||||||||| ||||||||||||||| || ||||||||||||| ||||||||| || || || || ||||| |   |  ||||     |||| |      |   |      |    |  | |||   |         ||| |    ||   || |    | |     | | 
GAACGACATTGAGGTTTCGAAGCAGGTCCAGCAGATGGTGCAGTTCATCCGCCAGGAAGCAGAGGAGAAGGCCAACGAGATCTCTGTATCTGCTGAAGAGgtgaagttctttacaatgtcccttgtggtttcaggcgattctgttgaggggtttctctattgtgaagaatctgaatgtc--gagttaaaaatcttataggtt

upper sequence: LOC_Os01g46980.1 (Oryza sativa), 5'ss of exon 1
lower sequence: EFJ17636 (Selaginella moellendorffii), 5'ss of exon 1
GAACGACGCCGATGTCGCCAAGCAGATCCAGCAGATGGTGCGGTTCATCCGCCAGGAGGCCGAGGAGAAGGCCAGCGAGATCTCCGTCTCCGCCGAGGAGgtcagtacttacccctcccctcgcctcgcctctcccccgcgcgtcgaagcttcgggaagcctctcgatccgcgcctccgaagcttttcacccgcccgatc-----
|||||| ||||| |||||||||||| ||  |||||||||| | |||||||||||||| ||||||||||| |||| ||||||||| |||||||| || ||||| ||   ||   | || ||||  ||    | |   |   |  |  |    | |         | | | |   ||| ||  |    | ||      |||      
GAACGATGCCGAGGTCGCCAAGCAGGTCGCGCAGATGGTGAGATTCATCCGCCAGGAAGCCGAGGAGAAAGCCAACGAGATCTCGGTCTCCGCAGAAGAGgtaaggtttt---cttctcctcctcttctttgtagacttggaataaattgatagatggatggatgggttctttccttcggtggagctgac--attggatttccag

upper sequence: LOC_Os01g46980.1 (Oryza sativa), 5'ss of exon 1
lower sequence: EFJ29103 (Selaginella moellendorffii), 5'ss of exon 1
GAACGACGCCGATGTCGCCAAGCAGATCCAGCAGATGGTGCGGTTCATCCGCCAGGAGGCCGAGGAGAAGGCCAGCGAGATCTCCGTCTCCGCCGAGGAGgtcagtacttacccctcccctcgcctcgcctctcccccgcgcgtcgaagcttcgggaagcctctcgatccgcgcctccgaagcttttcacccgcccgatc-----
|||||| ||||| |||||||||||| ||  |||||||||| | |||||||||||||| ||||||||||| |||| ||||||||| |||||||| || ||||| ||   ||   | || ||||  ||    | |   |   |  |  |    | |         | | | |   ||| |   |    | ||      |||      
GAACGATGCCGAGGTCGCCAAGCAGGTCGCGCAGATGGTGAGATTCATCCGCCAGGAAGCCGAGGAGAAAGCCAACGAGATCTCGGTCTCCGCGGAAGAGgtaaggtttt---cttctcctcctcttctttgtagacttagaataaattgatagatggatggatgggttctttccttctgtggagctgac--attggatttccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33800263|gb|CF325997.1|CF325997
EST:     GCCAGGAGGCCGAGGAGAAGGCCAGCGAGATCTCCGTCTCCGCCGAGGAG                         GAGTTCAATATTGAGAAGCTTCAACTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGAGGAGAAGGCCAGCGAGATCTCCGTCTCCGCCGAGGAGgtcagtactt ... gtgtttgcagGAGTTCAATATTGAGAAGCTTCAACTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|40486588|gb|BX898040.1|BX898040
EST:     GGCCGGGGAGAAGG-CAGCGAGATCTCCGTCTCCGCCGAGGAG                         GAG-TCAATATTGAGAAGCTTCAACTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GGCCGAGGAGAAGGCCAGCGAGATCTCCGTCTCCGCCGAGGAGgtcagtactt ... gtgtttgcagGAGTTCAATATTGAGAAGCTTCAACTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|58593493|gb|CF991801.1|CF991801
EST:     GCCAGGAGGCCGAGGAGAAGGCCAGCGAGATCTCCGTCTCCGCCGAGGAG                         GAGTTCAATATTGAGAAGCTTCAACTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGAGGAGAAGGCCAGCGAGATCTCCGTCTCCGCCGAGGAGgtcagtactt ... gtgtttgcagGAGTTCAATATTGAGAAGCTTCAACTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|218488190|gb|FG970074.1|FG970074
EST:     GCCAGGAGGCCGAGGAGAAGGCCAGCGAGATCTCCGTCTCCGCCGAGGAG                         GAGTTCAATATTGAGAAGCTTCAACTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGAGGAGAAGGCCAGCGAGATCTCCGTCTCCGCCGAGGAGgtcagtactt ... gtgtttgcagGAGTTCAATATTGAGAAGCTTCAACTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|58604131|gb|CK014659.1|CK014659
EST:     GCCAGGAGGCCGAGGAGAAGGCCAGCGAGATCTCCGTCTCCGCCGAGGAG                         GAGTTCAATATTGAGAAGCTTCAACTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGAGGAGAAGGCCAGCGAGATCTCCGTCTCCGCCGAGGAGgtcagtactt ... gtgtttgcagGAGTTCAATATTGAGAAGCTTCAACTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|58586214|gb|CF984522.1|CF984522
EST:     GCCAGGAGGCCGAGGAGAAGGCCAGCGAGATCTCCGTCTCCGGCGAGGAG                         GAGTTCAATATTGAGAAGCTTCAACTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGAGGAGAAGGCCAGCGAGATCTCCGTCTCCGCCGAGGAGgtcagtactt ... gtgtttgcagGAGTTCAATATTGAGAAGCTTCAACTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|58594166|gb|CF992474.1|CF992474
EST:     GCCAGGAGGCCGAGGAGAAGGCCAGCGAGATCTCCGTCTCCGGCGAGGAG                         GAGTTCAATATTGAGAAGCTTCAACTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGAGGAGAAGGCCAGCGAGATCTCCGTCTCCGCCGAGGAGgtcagtactt ... gtgtttgcagGAGTTCAATATTGAGAAGCTTCAACTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|88392356|gb|CI612830.1|CI612830
EST:     GCCAGGAGGCCGAGGAGAAGGCCAGCGAGATCTCCGTCTCCGCCGAGGAG                         GAGTTCAATATTGAGAAGCTTCAACTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGAGGAGAAGGCCAGCGAGATCTCCGTCTCCGCCGAGGAGgtcagtactt ... gtgtttgcagGAGTTCAATATTGAGAAGCTTCAACTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|2310524|gb|C26679.1|C26679
EST:     GCCAGGAGGCCGAGGAGAAGGCCAGCNAGATCTCCGTCTCCGCCGAGGAG                         GAGTTCAATATTGAGAAGCTTCAACTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGAGGAGAAGGCCAGCGAGATCTCCGTCTCCGCCGAGGAGgtcagtactt ... gtgtttgcagGAGTTCAATATTGAGAAGCTTCAACTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|33657536|gb|CF280150.1|CF280150
EST:     GCCAGGAGGCCGATGATAAGGCCAGCGAGATCTCCGTCTCCGCCGAGGAG                         GAGTTCAATATTGAGAAGCTTCAACTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGAGGAGAAGGCCAGCGAGATCTCCGTCTCCGCCGAGGAGgtcagtactt ... gtgtttgcagGAGTTCAATATTGAGAAGCTTCAACTTGTTGAAGCTGAGAAAAAGAAGATC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 74 (downstream exon)
Score: 100

GAACGACGCCGATGTCGCCAAGCAGATCCAGCAGATGGTGCGGTTCATCCGCCAGGAGGCCGAGGAGAAGGCCAGCGAGATCTCCGTCTCCGCCGAGGAGgtcagtactt ... gtgtttgcagGAGTTCAATATTGAGAAGCTTCAACTTGTTGAAGCTGAGAAAAAGAAGATCAGGCAAGAATATGAACGGAAAGAGAAGCAAGTCGAAGTTAGAAAGAAAA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAACGACGCCGATGTCGCCAAGCAGATCCAGCAGATGGTGCGGTTCATCCGCCAGGAGGCCGAGGAGAAGGCCAGCGAGATCTCCGTCTCCGCCGAGGAGgtcagtacttacccctcccctcgcctcgcctctcccccgcgcgtcgaagcttcgggaagcctctcgatccgcgcctccgaagcttttcacccgcccgatc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctcgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccgcgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccgccc