1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ctcgtttgtataactagtcctttttcaccatcacaagctcatgtatcacaacatggaacaagtgtatatggctagtaatgcaatagagttgagtttgtagGAATTGATCGGGCTCGGAGCCAAGACGTTAGTTGTTCCTGGTAATCTCCCAATTGGATGTATTCCACATTATCTCATGATATTCAAGAGTGGTAAGAAGG
species | Oryza sativa |
transcript | LOC_Os01g46169.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTCGCAGCTTCACTCCGAGTATCATTGCCAGAATTTCTTCCACGATCACT GAATTGATCGGGCTCGGAGCCAAGACGTTAGTTGTTCCTGGTAATCTCCCAEST: gi|29689736|gb|CB686011.1|CB686011
genomic: TTCGCAGCTTCACTCCGAGTATCATTGCCAAAATTTCTTCCACAATCACTgtgagtaata ... gagtttgtagGAATTGATCGGGCTCGGAGCCAAGACGTTAGTTGTTCCTGGTAATCTCCCA
EST: TTCGCAGCTTCACTCCGAGTATCATTGCCAAAATTTCTTCCACAATCACT GAATTGATCGGGCTCGGAGCCAAGACGTTAGTTGTTCCTGGTAATCTCCCAEST: gi|29659851|gb|CB656126.1|CB656126
genomic: TTCGCAGCTTCACTCCGAGTATCATTGCCAAAATTTCTTCCACAATCACTgtgagtaata ... gagtttgtagGAATTGATCGGGCTCGGAGCCAAGACGTTAGTTGTTCCTGGTAATCTCCCA
EST: TTCGCAGCTTCACTCCGAGTATCATTGCCAAAATTTCTTCCACAATCACT GAATTGATCGGGCTCGGAGCCAAGACGTTAGTTGTTCCTGGTAATCTCCCAEST: gi|29666602|gb|CB662877.1|CB662877
genomic: TTCGCAGCTTCACTCCGAGTATCATTGCCAAAATTTCTTCCACAATCACTgtgagtaata ... gagtttgtagGAATTGATCGGGCTCGGAGCCAAGACGTTAGTTGTTCCTGGTAATCTCCCA
EST: TTCGCAGCTTCACTCCGAGTATCATTGCCAAAATTTCTTCCACAATCACT GAATTGATCGGGCTCGGAGCCAAGACGTTAGTTGTTCCTGGTAATCTCCNC
genomic: TTCGCAGCTTCACTCCGAGTATCATTGCCAAAATTTCTTCCACAATCACTgtgagtaata ... gagtttgtagGAATTGATCGGGCTCGGAGCCAAGACGTTAGTTGTTCCTGGTAATCTCC-C
tcacaacatggaacaagtgtatatggctagtaatgcaatagagttgagtttgtagGAATTGATCGGGCTCGGAGCCAAGACGTTAGTTGTTCCTGGTAATCTCCCAATTGGATGTATTCCACATTATCTCATGATATTCAAGAGTGGTAAGAAGG
tgtatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcgtttgtataactagtcctttttcaccatcacaagctcatgtatcacaacatggaacaagtgtatatggctagtaatgcaatagagttgagtttgtagGAATTGATCGGGCTCGGAGCCAAGACGTTAGTTGTTCCTGGTAATCTCCCAATTGGATGTATTCCACATTATCTCATGATATTCAAGAGTGGTAAGAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - -ttcacca
- - - - - - - - - - - - - - - -cacaagc
- - - - - - - - - - - - - - - - - - - -catgtat
- - - - - - - - - - - - - - - - - - - - - - - - - -catggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taatgca