1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atgtttaactaccatataaagcatcaattttgatacttaaaggcccttttcaacaatactacatatttacatgctaattctaaccatgtttatttcacagATTGCAACGACATGATGAATCAATCTCTCTTCTTAGTCGGAGAAATTGGTGGCAATGATTACAACCATCCTCTTATGGGCGGGGTATCCATTAGAAAGAT
species | Oryza sativa |
transcript | LOC_Os01g46169.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGGAGCCACGGATCCGGGTGAAGGCCAAGACCCGCAAGACCTTGAGCAAG ATTGCAACGACATGATGAATCAATCTCTCTTCTGAGTCGGAGAAATTGGTGEST: gi|29680942|gb|CB677217.1|CB677217
genomic: GGGAGCCACGGATCCGGGTGAAGGCCAAGACCCGCAAGACCTTGAGCAAGgcaagtcatc ... tatttcacagATTGCAACGACATGATGAATCAATCTCTCTTCTTAGTCGGAGAAATTGGTG
EST: GGGAGCCACGGATCCGGGTGAAGGCCAAGACCCGCAAGACCTTGAGCAAG ATTGCAACGACATGATGAATCAATCTCTCTTCTTAGTCGGAGAAATTGGTGEST: gi|29689736|gb|CB686011.1|CB686011
genomic: GGGAGCCACGGATCCGGGTGAAGGCCAAGACCCGCAAGACCTTGAGCAAGgcaagtcatc ... tatttcacagATTGCAACGACATGATGAATCAATCTCTCTTCTTAGTCGGAGAAATTGGTG
EST: GGGAGCCACGGATCCGGGTGAAGGCCAAGACCCGCAAGACCTTGAGCAAG ATTGCAACGACATGATGAATCAATCTCTCTTCTTAGTCGGAGAAATTGGTGEST: gi|29666602|gb|CB662877.1|CB662877
genomic: GGGAGCCACGGATCCGGGTGAAGGCCAAGACCCGCAAGACCTTGAGCAAGgcaagtcatc ... tatttcacagATTGCAACGACATGATGAATCAATCTCTCTTCTTAGTCGGAGAAATTGGTG
EST: GGGAGCCACGGATCCGGGTGAAGGCCAAGACCCGCAAGACCTTGAGCAAG ATTGCAACGACATGATGAATCAATCTCTCTTCTTAGTCGGAGAAATTGGTG
genomic: GGGAGCCACGGATCCGGGTGAAGGCCAAGACCCGCAAGACCTTGAGCAAGgcaagtcatc ... tatttcacagATTGCAACGACATGATGAATCAATCTCTCTTCTTAGTCGGAGAAATTGGTG
cttttcaacaatactacatatttacatgctaattctaaccatgtttatttcacagATTGCAACGACATGATGAATCAATCTCTCTTCTTAGTCGGAGAAATTGGTGGCAATGATTACAACCATCCTCTTATGGGCGGGGTATCCATTAGAAAGAT
ttctaac putative branch site (score: 1)
tttatttc putative PPT
aatactacatattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtttaactaccatataaagcatcaattttgatacttaaaggcccttttcaacaatactacatatttacatgctaattctaaccatgtttatttcacagATTGCAACGACATGATGAATCAATCTCTCTTCTTAGTCGGAGAAATTGGTGGCAATGATTACAACCATCCTCTTATGGGCGGGGTATCCATTAGAAAGAT
- - - - - - - - - - - - - - - tgatact
- - - - - - - - - - - - - - - - - - - - - - - - - -aacaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tacatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatgtt