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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgctactcgcaaccaatccagcccctccacctgtatttgcttaacccaacatagtactaatcacttgagatttggaaatcgcgcgcgtggcgccggcctcagCTGACGCGCTGGGGCTGCCGTTCCTGCGGCCGTACTGGGGCGGGCGGACCACGGGGGACTTCGCCAGCGGGGCCAACTTCGCGGTGGGCGGCGCCACGGC

Basic information

species Oryza sativa
transcript LOC_Os01g46169.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86902605|gb|CI306408.1|CI306408
EST:     CCGCGCCACCGGCCGGGCCTCCAACGGCCGCCTCATCATCGACTTCATCG                         CTGACGCGCTGGGGCTGCCGTTCCTGCGGCCGTACTGGGGCGGGCG
genomic: CCGCGCCACCGGCCGGGCCTCCAACGGCCGCCTCATCATCGACTTCATCGgtacgctact ... ccggcctcagCTGACGCGCTGGGGCTGCCGTTCCTGCGGCCGTACTGGGGCGGGCG
EST: gi|88420709|gb|CI564545.1|CI564545
EST:     CCGCGCCACCGGCCGGGCCTCCAACGGCCGCCTCATCATCGACTTCATCG                         CTGACGCGCTGGGGCTGCCGTTCCTGCGGACGTACTGGGGCGGGCGGACCA
genomic: CCGCGCCACCGGCCGGGCCTCCAACGGCCGCCTCATCATCGACTTCATCGgtacgctact ... ccggcctcagCTGACGCGCTGGGGCTGCCGTTCCTGCGGCCGTACTGGGGCGGGCGGACCA
EST: gi|88740878|gb|CI763393.1|CI763393
EST:     CCGCGCCACCGGCCGGGCCTCCAACGGCCGCCTCATCATCGACTTCATCG                         CTGACACGCTGGGGCTGCCGTTCCTGCGGC
genomic: CCGCGCCACCGGCCGGGCCTCCAACGGCCGCCTCATCATCGACTTCATCGgtacgctact ... ccggcctcagCTGACGCGCTGGGGCTGCCGTTCCTGCGGC
EST: gi|29680942|gb|CB677217.1|CB677217
EST:     CCGCGCCACCGGCCGGGCCTCCAACGGCCGCCTCATCATCGACTTCATCG                         CTGACGCGCTGGGGCTGCCGTTCCTGCGGCCGTACTGGGGCGGGCGGACCA
genomic: CCGCGCCACCGGCCGGGCCTCCAACGGCCGCCTCATCATCGACTTCATCGgtacgctact ... ccggcctcagCTGACGCGCTGGGGCTGCCGTTCCTGCGGCCGTACTGGGGCGGGCGGACCA
EST: gi|88575169|gb|CI669314.1|CI669314
EST:     CCGCGCCACCGGCCGGGCCTCCAACGGCCGCCTCATCATCGACTTCATCG                         CTGACGCGCTGGGGCTGCCGTTCCTGCGGCCGTACTGGGGCGGGCGGACCA
genomic: CCGCGCCACCGGCCGGGCCTCCAACGGCCGCCTCATCATCGACTTCATCGgtacgctact ... ccggcctcagCTGACGCGCTGGGGCTGCCGTTCCTGCGGCCGTACTGGGGCGGGCGGACCA
EST: gi|29666602|gb|CB662877.1|CB662877
EST:     CCGCGCCACCGGCCGGGCCTCCAACGGCCGCCTCATCATCGACTTCATCG                         CTGACGCGCTGGGGCTGCCGTTCCTGCGGCCGTACTGGGGCGGGCGGACCA
genomic: CCGCGCCACCGGCCGGGCCTCCAACGGCCGCCTCATCATCGACTTCATCGgtacgctact ... ccggcctcagCTGACGCGCTGGGGCTGCCGTTCCTGCGGCCGTACTGGGGCGGGCGGACCA
EST: gi|88400834|gb|CI616839.1|CI616839
EST:     CCGCGCCACCGGCCGGGCCTCCAACGGCCGCCTCATCATCGACTTCATCG                         CTGACGCGCTGGGGCTGCCGTTCCTGCGGCCGTACTGGGGCGGGCGGACCA
genomic: CCGCGCCACCGGCCGGGCCTCCAACGGCCGCCTCATCATCGACTTCATCGgtacgctact ... ccggcctcagCTGACGCGCTGGGGCTGCCGTTCCTGCGGCCGTACTGGGGCGGGCGGACCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacatagtactaatcacttgagatttggaaatcgcgcgcgtggcgccggcctcagCTGACGCGCTGGGGCTGCCGTTCCTGCGGCCGTACTGGGGCGGGCGGACCACGGGGGACTTCGCCAGCGGGGCCAACTTCGCGGTGGGCGGCGCCACGGC
       tactaat  putative branch site (score: 1)
       tactaat  TA-rich tract