1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ACACCATGCTGAGCATAAGCAGAAACATCAATCCAGCAGACCAAGAAATGCTCAAAACATACAAGAGGAGAAGAGTGAACAGGGCTTCCATCCCTCAGTTgttagacgacactggtggagaaaccatctttggtcggtcgaccagatttcacaatagtcccggttatattaaaaaccgcgactaaaaatatctttagtcc...
species | Oryza sativa |
transcript | LOC_Os01g45020.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTCAAAACATACAAGAGGAGAAGAGTGAACAGGGCTACCATCCCTCAGTTGTEST: gi|58683739|gb|CK072426.1|CK072426
genomic: CTCAAAACATACAAGAGGAGAAGAGTGAACAGGGCTTCCATCCCTCAG-T-Tgttagacgac ... tctctacca
EST: CTCAAAACATACAAGAGGAGAAGAGTGAACAGGGCTTCCATCCCTCAGTT GEST: gi|58683739|gb|CK072426.1|CK072426
genomic: CTCAAAACATACAAGAGGAGAAGAGTGAACAGGGCTTCCATCCCTCAGTTgttagacgac ... tctctaccag-
EST: CTCAAAACATACAAGAGGAGAAGAGTGAACAGGGCTTCCATCCCTCAGTT GEST: gi|58612562|gb|CK040274.1|CK040274
genomic: CTCAAAACATACAAGAGGAGAAGAGTGAACAGGGCTTCCATCCCTCAGTTgttagacgac ... tctctaccag-
EST: CTCAAAACATACAAGAGGAGAAGAGTGAACAGGGCTTCCATCCCTCAGTT GEST: gi|58612562|gb|CK040274.1|CK040274
genomic: CTCAAAACATACAAGAGGAGAAGAGTGAACAGGGCTTCCATCCCTCAGTTgttagacgac ... tctctaccag-
EST: CTCAAAACATACAAGAGGAGAAGAGTGAACAGGGCTTCCATCCCTCAGTT GEST: gi|58654783|gb|CK043463.1|CK043463
genomic: CTCAAAACATACAAGAGGAGAAGAGTGAACAGGGCTTCCATCCCTCAGTTgttagacgac ... tctctaccag-
EST: CTCAAAACATACAAGAGGAGAAGAGTGAACAGGGCTTCCATCCCTCAGTTGTEST: gi|58670939|gb|CK059625.1|CK059625
genomic: CTCAAAACATACAAGAGGAGAAGAGTGAACAGGGCTTCCATCCCTCAG-T-Tgttagacgac ... tctctacca
EST: CTCAAAACATACAAGAGGAGAAGAGTGAACAGGGCTTCCATCCCTCAGTT GEST: gi|58670939|gb|CK059625.1|CK059625
genomic: CTCAAAACATACAAGAGGAGAAGAGTGAACAGGGCTTCCATCCCTCAGTTgttagacgac ... tctctaccag-
EST: CTCAAAACATACAAGAGGAGAAGAGTGAACAGGGCTTCCATCCCTCAGTT GEST: gi|58659343|gb|CK048023.1|CK048023
genomic: CTCAAAACATACAAGAGGAGAAGAGTGAACAGGGCTTCCATCCCTCAGTTgttagacgac ... tctctaccag-
EST: CTCAAAACATACAAGAGGAGAAGAGTGAACAGGGCTTCCATCCCTCAGTTGTEST: gi|58668111|gb|CK056797.1|CK056797
genomic: CTCAAAACATACAAGAGGAGAAGAGTGAACAGGGCTTCCATCCCTCAG-T-Tgttagacgac ... tctctacca
EST: CTCAAAACATACAAGAGGAGAAGAGTGAACAGGGCTTCCATCCCTCAGTT GEST: gi|58668111|gb|CK056797.1|CK056797
genomic: CTCAAAACATACAAGAGGAGAAGAGTGAACAGGGCTTCCATCCCTCAGTTgttagacgac ... tctctaccag-
EST: CTCAAAACATACAAGAGGAGAAGAGTGAACAGGGCTTCCATCCCTCAGTT G
genomic: CTCAAAACATACAAGAGGAGAAGAGTGAACAGGGCTTCCATCCCTCAGTTgttagacgac ... tctctaccag-
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACACCATGCTGAGCATAAGCAGAAACATCAATCCAGCAGACCAAGAAATGCTCAAAACATACAAGAGGAGAAGAGTGAACAGGGCTTCCATCCCTCAGTTgttagacgacactggtggagaaaccatctttggtcggtcgaccagatttcacaatagtcccggttatattaaaaaccgcgactaaaaatatctttagtcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA