1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...catctaatccagtcattgctagcatagacagcaccccctgccctgagtatacggtattccacccatatttctgttaacgaggtatatttgctgttgctagTGCTTATTACGCCATGGACTTGAATACCGCAAAGAGTATGATGCTGGACGACAGCAACATCAGCCCAAGAAAGAAGACATTCACGACACGTAAGAACACC
species | Oryza sativa |
transcript | LOC_Os01g45020.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCGCAGGGCCGCCGCCACGTCGCACCGGGGTAACTTCGAGTGCTCCCAAG TGCTTATTACGCCATGGACTTGAATACCGCAAAGAGTATGATGCTGGACGAEST: gi|58612562|gb|CK040274.1|CK040274
genomic: GCGCAGGGCCGCCGCCACGTCGCACCGGGGTAACTTCGAGTGCTCCCAAGgtgacaaact ... ctgttgctagTGCTTATTACGCCATGGACTTGAATACCGCAAAGAGTATGATGCTGGACGA
EST: GCGCAGGGCCGCCGCCACGTCGCACCGGGGTAACTTCGAGTGCTCCCAAG TGCTTATTACGCCATGGACTTGAATACCGCAAAGAGTATGATGCTGGACGAEST: gi|58670939|gb|CK059625.1|CK059625
genomic: GCGCAGGGCCGCCGCCACGTCGCACCGGGGTAACTTCGAGTGCTCCCAAGgtgacaaact ... ctgttgctagTGCTTATTACGCCATGGACTTGAATACCGCAAAGAGTATGATGCTGGACGA
EST: GCGCAGGGCCGCCGCCACGTCGCACCGGGGTAACTTCGAGTGCTCCCAAG TGCTTATTACGCCATGGACTTGAATACCGCAAAGAGTATGATGCTGGACGAEST: gi|88743372|gb|CI766880.1|CI766880
genomic: GCGCAGGGCCGCCGCCACGTCGCACCGGGGTAACTTCGAGTGCTCCCAAGgtgacaaact ... ctgttgctagTGCTTATTACGCCATGGACTTGAATACCGCAAAGAGTATGATGCTGGACGA
EST: GCGCAGGGCCGCCGCCACGTCGCACCGGGGTAACTTCGAGTGCTCCCAAG TGCTTATTACGCCATGGACTTGAATACCGCAAAGAGTATGATGCTGGACGAEST: gi|58668111|gb|CK056797.1|CK056797
genomic: GCGCAGGGCCGCCGCCACGTCGCACCGGGGTAACTTCGAGTGCTCCCAAGgtgacaaact ... ctgttgctagTGCTTATTACGCCATGGACTTGAATACCGCAAAGAGTATGATGCTGGACGA
EST: GCGCAGGGCCGCCGCCACGTCGCACCGGGGTAACTTCGAGTGCTCCCAAG TGCTTATTACGCCATGGACTTGAATACCGCAAAGAGTATGATGCTGGACGA
genomic: GCGCAGGGCCGCCGCCACGTCGCACCGGGGTAACTTCGAGTGCTCCCAAGgtgacaaact ... ctgttgctagTGCTTATTACGCCATGGACTTGAATACCGCAAAGAGTATGATGCTGGACGA
agtatacggtattccacccatatttctgttaacgaggtatatttgctgttgctagTGCTTATTACGCCATGGACTTGAATACCGCAAAGAGTATGATGCTGGACGACAGCAACATCAGCCCAAGAAAGAAGACATTCACGACACGTAAGAACACC
tgttaac putative branch site (score: 2)
tatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catctaatccagtcattgctagcatagacagcaccccctgccctgagtatacggtattccacccatatttctgttaacgaggtatatttgctgttgctagTGCTTATTACGCCATGGACTTGAATACCGCAAAGAGTATGATGCTGGACGACAGCAACATCAGCCCAAGAAAGAAGACATTCACGACACGTAAGAACACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - tgctagc
- - - - - - - - - - - - - - cagcacc
- - - - - - - - - - - - - - - - - - cctgccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttctgtt