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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCCACCCCCTAACTCCCCTGCCGCCGTCCTTCTTCTTCCTTAACTTCGGCGCAGGGCCGCCGCCACGTCGCACCGGGGTAACTTCGAGTGCTCCCAAGgtgacaaactttctttcgctttacttggcctattttggaagatatcacttaacctcttatttaggagatattacttaacctctttgacgggttcccatgg...

Basic information

species Oryza sativa
transcript LOC_Os01g45020.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58683739|gb|CK072426.1|CK072426
EST:     GCGCAGGGCCGCCGCCACGTCGCACCGGGGTAACTTCGAGTGCTCCCAAG                         TGCTTATTACGCCATGGACTTGAATACCGCAAAGAGTATGATGCTGGACGA
genomic: GCGCAGGGCCGCCGCCACGTCGCACCGGGGTAACTTCGAGTGCTCCCAAGgtgacaaact ... ctgttgctagTGCTTATTACGCCATGGACTTGAATACCGCAAAGAGTATGATGCTGGACGA
EST: gi|58612562|gb|CK040274.1|CK040274
EST:     GCGCAGGGCCGCCGCCACGTCGCACCGGGGTAACTTCGAGTGCTCCCAAG                         TGCTTATTACGCCATGGACTTGAATACCGCAAAGAGTATGATGCTGGACGA
genomic: GCGCAGGGCCGCCGCCACGTCGCACCGGGGTAACTTCGAGTGCTCCCAAGgtgacaaact ... ctgttgctagTGCTTATTACGCCATGGACTTGAATACCGCAAAGAGTATGATGCTGGACGA
EST: gi|58670939|gb|CK059625.1|CK059625
EST:     GCGCAGGGCCGCCGCCACGTCGCACCGGGGTAACTTCGAGTGCTCCCAAG                         TGCTTATTACGCCATGGACTTGAATACCGCAAAGAGTATGATGCTGGACGA
genomic: GCGCAGGGCCGCCGCCACGTCGCACCGGGGTAACTTCGAGTGCTCCCAAGgtgacaaact ... ctgttgctagTGCTTATTACGCCATGGACTTGAATACCGCAAAGAGTATGATGCTGGACGA
EST: gi|88743372|gb|CI766880.1|CI766880
EST:     GCGCAGGGCCGCCGCCACGTCGCACCGGGGTAACTTCGAGTGCTCCCAAG                         TGCTTATTACGCCATGGACTTGAATACCGCAAAGAGTATGATGCTGGACGA
genomic: GCGCAGGGCCGCCGCCACGTCGCACCGGGGTAACTTCGAGTGCTCCCAAGgtgacaaact ... ctgttgctagTGCTTATTACGCCATGGACTTGAATACCGCAAAGAGTATGATGCTGGACGA
EST: gi|58668111|gb|CK056797.1|CK056797
EST:     GCGCAGGGCCGCCGCCACGTCGCACCGGGGTAACTTCGAGTGCTCCCAAG                         TGCTTATTACGCCATGGACTTGAATACCGCAAAGAGTATGATGCTGGACGA
genomic: GCGCAGGGCCGCCGCCACGTCGCACCGGGGTAACTTCGAGTGCTCCCAAGgtgacaaact ... ctgttgctagTGCTTATTACGCCATGGACTTGAATACCGCAAAGAGTATGATGCTGGACGA