1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATACATAACAGTAGATGAGTTGGAAGAAGCTCTGAAGAAGTATGATATGGGGGACGATAAAACGATTAAGGAAATCATCGCTGAAGTAGATACTGATCATgtaagtatattccgtaacacatcttaaagcaagctctttgataacaaaatgtgcatgtcccaaccatcctacaaggagaatgccaaagatttccaatcctaaagtacctttcttaagtagaatttgagctcaaacacaggctgcgaggcccatttattacagtgctaatttttccattttttgttttcacag
species | Oryza sativa |
transcript | LOC_Os01g43410.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GGGACGATAAAACGATTAAGGAAATCATCGCTGAAGTAGATACTGATCAT GATGGAAGAATTAACTACCAGGAGTTTGTCGCCATGATGAGGAACAACAACEST: gi|29639095|gb|CB644104.1|CB644104
genomic: GGGACGATAAAACGATTAAGGAAATCATCGCTGAAGTAGATACTGATCATgtaagtatat ... gttttcacagGATGGAAGAATTAACTACCAGGAGTTTGTCGCCATGATGAGGAACAACAAC
EST: GGGACGATAAAACGATTAAGGAAATCATCGCTGAAGTAGATACTGATCAT GATGGAAGAATTAACTACCAGGAGTTTGTCGCCATGATGAGGAACAACAACEST: gi|29657260|gb|CB653535.1|CB653535
genomic: GGGACGATAAAACGATTAAGGAAATCATCGCTGAAGTAGATACTGATCATgtaagtatat ... gttttcacagGATGGAAGAATTAACTACCAGGAGTTTGTCGCCATGATGAGGAACAACAAC
EST: GGGACGATAAAACGATTAAGGAAATCATCGCTGAAGTAGATACTGATCAT GATGGAAGAATTAACTACCAGGAGTTTGTCGCCATGATGAGGAACAACAACEST: gi|86896428|gb|CI328842.1|CI328842
genomic: GGGACGATAAAACGATTAAGGAAATCATCGCTGAAGTAGATACTGATCATgtaagtatat ... gttttcacagGATGGAAGAATTAACTACCAGGAGTTTGTCGCCATGATGAGGAACAACAAC
EST: ATACTGATCAT GATGGAAGAATTAACTACCAGGAGTTTGTCGCCATGATGAGGAACAACAACEST: gi|29681100|gb|CB677375.1|CB677375
genomic: ATACTGATCATgtaagtatat ... gttttcacagGATGGAAGAATTAACTACCAGGAGTTTGTCGCCATGATGAGGAACAACAAC
EST: GGGACGATAAAACGATTAAGGAAATCATCGCTGAAGTAGATACTGATCAT GATGGAAGAATTAACTACCAGGAGTTTGTCGCCATGATGAGGAACAACAACEST: gi|112787230|gb|EE592302.1|EE592302
genomic: GGGACGATAAAACGATTAAGGAAATCATCGCTGAAGTAGATACTGATCATgtaagtatat ... gttttcacagGATGGAAGAATTAACTACCAGGAGTTTGTCGCCATGATGAGGAACAACAAC
EST: GGGACGATAAAACGATTAAGGAAATCATCGCTGAAGTAGATACTGATCGT GATGGAAGAATTAACTACCAGGAGTTTGTCGCCATGATGAGGAACAACAACEST: gi|29637711|gb|CB642720.1|CB642720
genomic: GGGACGATAAAACGATTAAGGAAATCATCGCTGAAGTAGATACTGATCATgtaagtatat ... gttttcacagGATGGAAGAATTAACTACCAGGAGTTTGTCGCCATGATGAGGAACAACAAC
EST: GGGACGATAAAACGATTAAGGAAATCATCGCTGAAGTAGATACTGATCAT GATGGAAGAATTAACTACCAGGAGTTTGTCGCCATGATGAGGAACAACAACEST: gi|29678242|gb|CB674517.1|CB674517
genomic: GGGACGATAAAACGATTAAGGAAATCATCGCTGAAGTAGATACTGATCATgtaagtatat ... gttttcacagGATGGAAGAATTAACTACCAGGAGTTTGTCGCCATGATGAGGAACAACAAC
EST: GGGACGATAAAACGATTAAGGAAATCATCGCTGAAGTAGATACTGATCAT GATGGAAGAATTAACTACCAGGAGTTTGTCGCCATGATGAGGAACAACAACEST: gi|86260437|gb|CI066310.1|CI066310
genomic: GGGACGATAAAACGATTAAGGAAATCATCGCTGAAGTAGATACTGATCATgtaagtatat ... gttttcacagGATGGAAGAATTAACTACCAGGAGTTTGTCGCCATGATGAGGAACAACAAC
EST: GGGACGATAAAACGATTAAGGAAATCATCGCTGAAGTAGATACTGATCAT GATGGAAGAATTAACTACCAGGAGTTTGTCGCCATGATGAGGAACAACAACEST: gi|29633567|gb|CB638576.1|CB638576
genomic: GGGACGATAAAACGATTAAGGAAATCATCGCTGAAGTAGATACTGATCATgtaagtatat ... gttttcacagGATGGAAGAATTAACTACCAGGAGTTTGTCGCCATGATGAGGAACAACAAC
EST: GGGACGATAAAACGATTAAGGAAATCATCGCTGAAGTAGATACTGATCAT GATGGAAGAATTAACTACCAGGAGTTTGTCGCCATGATGAGGAACAACAACEST: gi|29633531|gb|CB638540.1|CB638540
genomic: GGGACGATAAAACGATTAAGGAAATCATCGCTGAAGTAGATACTGATCATgtaagtatat ... gttttcacagGATGGAAGAATTAACTACCAGGAGTTTGTCGCCATGATGAGGAACAACAAC
EST: GGGACGATAAAACGATTAAGGAAATCATCGCTGAAGTAGATACTGATCAT GATGGAAGAATTAACTACCAGGAGTTTGTCGCCATGATGAGGAACAACAAC
genomic: GGGACGATAAAACGATTAAGGAAATCATCGCTGAAGTAGATACTGATCATgtaagtatat ... gttttcacagGATGGAAGAATTAACTACCAGGAGTTTGTCGCCATGATGAGGAACAACAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATACATAACAGTAGATGAGTTGGAAGAAGCTCTGAAGAAGTATGATATGGGGGACGATAAAACGATTAAGGAAATCATCGCTGAAGTAGATACTGATCATgtaagtatattccgtaacacatcttaaagcaagctctttgataacaaaatgtgcatgtcccaaccatcctacaaggagaatgccaaagatttccaatcctaaagtacctttcttaagtagaatttgagctcaaacacaggctgcgaggcccatttattacagtgctaatttttccattttttgttttcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG