1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...atggaagaatttgagtatttggcagtagcatgtatacacaactgttctggtggttccagcacatgccatcatatcattatttccttgttttcccaaacagGCTGATGTTGATGGAAATGGAACCATTGACTATGCTGAGTTCATATCAGCGACAATGCACATGAACAGATTGGAGAAGGAAGACCACATACTTAAAGCAT
species | Oryza sativa |
transcript | LOC_Os01g43410.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AACTTGGCACCAAAATTTCTGAATCAGAAATTAGACAGCTGATGGAGGCG GCTGATGTTGATGGAAATGGAACCATTGACTATGCTGAGTTCATATCAGCGEST: gi|29657260|gb|CB653535.1|CB653535
genomic: AACTTGGCACCAAAATTTCTGAATCAGAAATTAGACAGCTGATGGAGGCGgtatgttttt ... tcccaaacagGCTGATGTTGATGGAAATGGAACCATTGACTATGCTGAGTTCATATCAGCG
EST: AACTTGGCACCAAAATTTCTGAATCAGAAATTAGACAGCTGATGGAGGCG GCTGATGTTGATGGAAATGGAACCATTGACTATGCTGAGTTCATATCAGCGEST: gi|29681100|gb|CB677375.1|CB677375
genomic: AACTTGGCACCAAAATTTCTGAATCAGAAATTAGACAGCTGATGGAGGCGgtatgttttt ... tcccaaacagGCTGATGTTGATGGAAATGGAACCATTGACTATGCTGAGTTCATATCAGCG
EST: AACTTGGCACCAAAATTTCTGAATCAGAAATTAGACAGCTGATGGAGGCG GCTGATGTTGATGGAAATGGAACCATTGACTATGCTGAGTTCATATCAGCGEST: gi|112787230|gb|EE592302.1|EE592302
genomic: AACTTGGCACCAAAATTTCTGAATCAGAAATTAGACAGCTGATGGAGGCGgtatgttttt ... tcccaaacagGCTGATGTTGATGGAAATGGAACCATTGACTATGCTGAGTTCATATCAGCG
EST: AACTTGGCACCAAAATTTCTGAATCAGAAATTAGACAGCTGATGGAGGCG GCTGATGTTGATGGAAATGGAACCATTGACTATGCTGAGTTCATATCAGCGEST: gi|29637711|gb|CB642720.1|CB642720
genomic: AACTTGGCACCAAAATTTCTGAATCAGAAATTAGACAGCTGATGGAGGCGgtatgttttt ... tcccaaacagGCTGATGTTGATGGAAATGGAACCATTGACTATGCTGAGTTCATATCAGCG
EST: AACTTGGCACCAAAATTTCTGAATCAGAAATTAGACAGCTGATGGAGGCG GCTGATGTTGATGGAAATGGAACCATTGACTATGCTGAGTTCATATCAGCGEST: gi|163926746|gb|EG715034.1|EG715034
genomic: AACTTGGCACCAAAATTTCTGAATCAGAAATTAGACAGCTGATGGAGGCGgtatgttttt ... tcccaaacagGCTGATGTTGATGGAAATGGAACCATTGACTATGCTGAGTTCATATCAGCG
EST: AACTTGGCACCAAAATTTCTGAATCAGAAATTAGACAGCTGATGGAGGCG GCTGATGTTGATGGAAATGGAACCATTGACTATGCTGAGTTCATATCAGCGEST: gi|29678242|gb|CB674517.1|CB674517
genomic: AACTTGGCACCAAAATTTCTGAATCAGAAATTAGACAGCTGATGGAGGCGgtatgttttt ... tcccaaacagGCTGATGTTGATGGAAATGGAACCATTGACTATGCTGAGTTCATATCAGCG
EST: AACTTGGCACCAAAATTTCTGAATCAGAAATTAGACAGCTGATGGAGGCG GCTGATGTTGATGGAAATGGAACCATTGACTATGCTGAGTTCATATCAGCG
genomic: AACTTGGCACCAAAATTTCTGAATCAGAAATTAGACAGCTGATGGAGGCGgtatgttttt ... tcccaaacagGCTGATGTTGATGGAAATGGAACCATTGACTATGCTGAGTTCATATCAGCG
tctggtggttccagcacatgccatcatatcattatttccttgttttcccaaacagGCTGATGTTGATGGAAATGGAACCATTGACTATGCTGAGTTCATATCAGCGACAATGCACATGAACAGATTGGAGAAGGAAGACCACATACTTAAAGCAT
tcattatttccttgtt CT-rich tract
atcatatcattattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atggaagaatttgagtatttggcagtagcatgtatacacaactgttctggtggttccagcacatgccatcatatcattatttccttgttttcccaaacagGCTGATGTTGATGGAAATGGAACCATTGACTATGCTGAGTTCATATCAGCGACAATGCACATGAACAGATTGGAGAAGGAAGACCACATACTTAAAGCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - -gcatgta
- - - - - - - - - - - - - - - - - -acacaac
- - - - - - - - - - - - - - - - - - - - - - - ctggtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - tccagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgcca