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...tttttaatagataatttctgctcttgtttctatataaaccgagttatcatttttactgtttgcaaatatagttaatgcacctaatactttaaatatacagACCACCCATGGATTAGAGAGGATGGAGAAGCCCCAGACAAGCCACTTGACATTACAGTTATCAGCAGGATGAAGCAGTTCAGGGCAATGAACAAGCTTAA
species | Oryza sativa |
transcript | LOC_Os01g43410.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GATGTTGCGGCAAGACCCAAAAGAGCGCCTTACTTCTGCTGAAATTTTGA ACCACCCATGGATTAGAGAGGATGGAGAAGCCCCAGACAAGCCACTTGACAEST: gi|29681099|gb|CB677374.1|CB677374
genomic: GATGTTGCGGCAAGACCCAAAAGAGCGCCTTACTTCTGCTGAAATTTTGAgtaagtccac ... aaatatacagACCACCCATGGATTAGAGAGGATGGAGAAGCCCCAGACAAGCCACTTGACA
EST: GATGTTGCGGCAAGACCCAAAAGAGCGCCTTACTTCTGCTGAAATTTTGA ACCACCCATGGATTAGAGAGGATGGAGAAGCCCCAGACAAGCCACTTGACAEST: gi|29657424|gb|CB653699.1|CB653699
genomic: GATGTTGCGGCAAGACCCAAAAGAGCGCCTTACTTCTGCTGAAATTTTGAgtaagtccac ... aaatatacagACCACCCATGGATTAGAGAGGATGGAGAAGCCCCAGACAAGCCACTTGACA
EST: GATGTTGCGGCAAGACCCAAAAGAGCGCCTTACTTCTGCTGAAATTTTGA ACCACCCATGGATTAGAGAGGATGGAGAAGCCCCAGAACA-GCCACTTGACEST: gi|29678241|gb|CB674516.1|CB674516
genomic: GATGTTGCGGCAAGACCCAAAAGAGCGCCTTACTTCTGCTGAAATTTTGAgtaagtccac ... aaatatacagACCACCCATGGATTAGAGAGGATGGAGAAGCCCCAGA-CAAGCCACTTGAC
EST: GATGTTGCGGCAAGACCCAAAAGAGCGCCTTACTTCTGCTGAAATTTTGA ACCACCCATGGATTAGAGAGGATGGAGAAGCCCCAGACAAGCCACTTGACA
genomic: GATGTTGCGGCAAGACCCAAAAGAGCGCCTTACTTCTGCTGAAATTTTGAgtaagtccac ... aaatatacagACCACCCATGGATTAGAGAGGATGGAGAAGCCCCAGACAAGCCACTTGACA
atcatttttactgtttgcaaatatagttaatgcacctaatactttaaatatacagACCACCCATGGATTAGAGAGGATGGAGAAGCCCCAGACAAGCCACTTGACATTACAGTTATCAGCAGGATGAAGCAGTTCAGGGCAATGAACAAGCTTAA
acctaat putative branch site (score: 31)
taatactttaaatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttaatagataatttctgctcttgtttctatataaaccgagttatcatttttactgtttgcaaatatagttaatgcacctaatactttaaatatacagACCACCCATGGATTAGAGAGGATGGAGAAGCCCCAGACAAGCCACTTGACATTACAGTTATCAGCAGGATGAAGCAGTTCAGGGCAATGAACAAGCTTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - -ttctgct
- - - - - - - - - - - - tgtttct
- - - - - - - - - - - - - - - - - -aaaccga
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgcac