1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaacttcaaatcgattttttttgggtcttgttctatctgttgtttgttagttctcattaatttgctaattttaaatctctctgagcagATACATAACAGTAGATGAGTTGGAAGAAGCTCTGAAGAAGTATGATATGGGGGACGATAAAACGATTAAGGAAATCATCGCTGAAGTAGATACTGATCAT
species | Oryza sativa |
transcript | LOC_Os01g43410.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAGCATTTGAGTATTTTGATAAGGACCACAGCGG ATACATAACAGTAGATGAGTTGGAAGAAGCTCTGAAGAAGTATGATATGGGEST: gi|29639095|gb|CB644104.1|CB644104
genomic: AAGCATTTGAGTATTTTGATAAGGACCACAGCGGgtaacttcaa ... ctctgagcagATACATAACAGTAGATGAGTTGGAAGAAGCTCTGAAGAAGTATGATATGGG
EST: GAAGACCACATACTTAAAGCATTTGAGTATTTTGATAAGGACCACAGCGG ATACATAACAGTAGATGAGTTGGAAGAAGCTCTGAAGAAGTATGATATGGGEST: gi|29657260|gb|CB653535.1|CB653535
genomic: GAAGACCACATACTTAAAGCATTTGAGTATTTTGATAAGGACCACAGCGGgtaacttcaa ... ctctgagcagATACATAACAGTAGATGAGTTGGAAGAAGCTCTGAAGAAGTATGATATGGG
EST: GAAGACCACATACTTAAAGCATTTGAGTATTTTGATAAGGACCACAGCGG ATACATAACAGTAGATGAGTTGGAAGAAGCTCTGAAGAAGTATGATATGGGEST: gi|29681100|gb|CB677375.1|CB677375
genomic: GAAGACCACATACTTAAAGCATTTGAGTATTTTGATAAGGACCACAGCGGgtaacttcaa ... ctctgagcagATACATAACAGTAGATGAGTTGGAAGAAGCTCTGAAGAAGTATGATATGGG
EST: GAAGACCACATACTTAAAGCATTTGAGTATTTTGATAAGGACCACAGCGG ATACATAACAGTAGATGAGTTGGAAGAAGCTCTGAAGAAGTATGATATGGGEST: gi|112787230|gb|EE592302.1|EE592302
genomic: GAAGACCACATACTTAAAGCATTTGAGTATTTTGATAAGGACCACAGCGGgtaacttcaa ... ctctgagcagATACATAACAGTAGATGAGTTGGAAGAAGCTCTGAAGAAGTATGATATGGG
EST: GAAGACCACATACTTAAAGCATTTGAGTATTTTGATAAGGACCACAGCGG ATACATAACAGTAGATGAGTTGGAAGAAGCTCTGAAGAAGTATGATATGGGEST: gi|29637711|gb|CB642720.1|CB642720
genomic: GAAGACCACATACTTAAAGCATTTGAGTATTTTGATAAGGACCACAGCGGgtaacttcaa ... ctctgagcagATACATAACAGTAGATGAGTTGGAAGAAGCTCTGAAGAAGTATGATATGGG
EST: GAAGACCACATACTTAAAGCATTTGAGTATTTTGATAAGGACCACAGCGG ATACATAACAGTAGATGAGTTGGAAGAAGCTCTGAAGAAGTATGATATGGGEST: gi|29678242|gb|CB674517.1|CB674517
genomic: GAAGACCACATACTTAAAGCATTTGAGTATTTTGATAAGGACCACAGCGGgtaacttcaa ... ctctgagcagATACATAACAGTAGATGAGTTGGAAGAAGCTCTGAAGAAGTATGATATGGG
EST: GAAGACCACATACTTAAAGCATTTGAGTATTTTGATAAGGACCACAGCGG ATACATAACAGTAGATGAGTTGGAAGAAGCTCTGAAGAAGTATGATATGGGEST: gi|86260437|gb|CI066310.1|CI066310
genomic: GAAGACCACATACTTAAAGCATTTGAGTATTTTGATAAGGACCACAGCGGgtaacttcaa ... ctctgagcagATACATAACAGTAGATGAGTTGGAAGAAGCTCTGAAGAAGTATGATATGGG
EST: GAAGACCACATACTTAAAGCATTTGAGTATTTTGATAAGGACCACAGCGG ATACATAACAGTAGATGAGTTGGAAGAAGCTCTGAAGAAGTATGATATGGGEST: gi|29633567|gb|CB638576.1|CB638576
genomic: GAAGACCACATACTTAAAGCATTTGAGTATTTTGATAAGGACCACAGCGGgtaacttcaa ... ctctgagcagATACATAACAGTAGATGAGTTGGAAGAAGCTCTGAAGAAGTATGATATGGG
EST: GAAGACCACATACTTAAAGCATTTGAGTATTTTGATAAGGACCACAGCGG ATACATAACAGTAGATGAGTTGGAAGAAGCTCTGAAGAAGTATGATATGGGEST: gi|29633531|gb|CB638540.1|CB638540
genomic: GAAGACCACATACTTAAAGCATTTGAGTATTTTGATAAGGACCACAGCGGgtaacttcaa ... ctctgagcagATACATAACAGTAGATGAGTTGGAAGAAGCTCTGAAGAAGTATGATATGGG
EST: GAAGACCACATACTTAAAGCATTTGAGTATTTTGATAAGGACCACAGCGG ATACATAACAGTAGATGAGTTGGAAGAAGCTCTGAAGAAGTATGATATGGG
genomic: GAAGACCACATACTTAAAGCATTTGAGTATTTTGATAAGGACCACAGCGGgtaacttcaa ... ctctgagcagATACATAACAGTAGATGAGTTGGAAGAAGCTCTGAAGAAGTATGATATGGG
tatctgttgtttgttagttctcattaatttgctaattttaaatctctctgagcagATACATAACAGTAGATGAGTTGGAAGAAGCTCTGAAGAAGTATGATATGGGGGACGATAAAACGATTAAGGAAATCATCGCTGAAGTAGATACTGATCAT
tgctaat putative branch site (score: 30)
tctctct putative PPT
tcattaatttgctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacttcaaatcgattttttttgggtcttgttctatctgttgtttgttagttctcattaatttgctaattttaaatctctctgagcagATACATAACAGTAGATGAGTTGGAAGAAGCTCTGAAGAAGTATGATATGGGGGACGATAAAACGATTAAGGAAATCATCGCTGAAGTAGATACTGATCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG