1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagtgcttgtcgattcctattataaaggattcaatagttattaatattgtgtgctaccaaattaccaaaatgtatttgtaaagtaacgacttttcttttcttttaaatgtttgtagCTGCATCTACTATTGGGTGGCTTGAACCCAAGGAGATGCTCCAGATCTTCTCTTTGAGGTTGTCCAGCTCCATGTCCTATCCTATTAGTGTTTACGGAAT
species | Oryza sativa |
transcript | LOC_Os01g40750.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAAGAGTTTGTGCTATCACCGTGAATACAAGACCAATGATACTTCTGAGA CTGCATCTACTATTGGGTGGCTTGAACCCAAGGAGATGCTCCAGATCTTCTEST: gi|29662408|gb|CB658683.1|CB658683
genomic: CAAGAGTTTGTGCTATCACCGTGAATACAAGACCAATGATACTTCTGAGAgtaagtgctt ... atgtttgtagCTGCATCTACTATTGGGTGGCTTGAACCCAAGGAGATGCTCCAGATCTTCT
EST: CAAGAGTTTGTGCTATCACCGTGAATACAAGACCAATGATACTTCTGAGA CTGCATCTACTATTGGGTGGCTTGAACCCAAGGAGATGCTCCAGATCTTCTEST: gi|396941565|gb|HO188774.1|HO188774
genomic: CAAGAGTTTGTGCTATCACCGTGAATACAAGACCAATGATACTTCTGAGAgtaagtgctt ... atgtttgtagCTGCATCTACTATTGGGTGGCTTGAACCCAAGGAGATGCTCCAGATCTTCT
EST: CGTGAATACAAGACCAATGATACTTCTGAGA CTGCATCTACTATTGGGTGGCTTGAACCCAAGGAGATGCTCCAGATCTTCT
genomic: CGTGAATACAAGACCAATGATACTTCTGAGAgtaagtgctt ... atgtttgtagCTGCATCTACTATTGGGTGGCTTGAACCCAAGGAGATGCTCCAGATCTTCT
ttaccaaaatgtatttgtaaagtaacgacttttcttttcttttaaatgtttgtagCTGCATCTACTATTGGGTGGCTTGAACCCAAGGAGATGCTCCAGATCTTCTCTTTGAGGTTGTCCAGCTCCATGTCCTATCCTATTAGTGTTTACGGAAT
aagtaac putative branch site (score: 8)
ttttcttttcttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgcttgtcgattcctattataaaggattcaatagttattaatattgtgtgctaccaaattaccaaaatgtatttgtaaagtaacgacttttcttttcttttaaatgtttgtagCTGCATCTACTATTGGGTGGCTTGAACCCAAGGAGATGCTCCAGATCTTCTCTTTGAGGTTGTCCAGCTCCATGTCCTATCCTATTAGTGTTTACGGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC