1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ctctccgtagaggccagagatgtaaaccatttctattatctgaaaaattcagattcagatgacgtctttgcctcagccaactcacacaatatgttgatagGTGACATCGACGAGGATAGTGATGATGATGGTTACGCAGACGAGGAGACAACTTGCCCAG
species | Oryza sativa |
transcript | LOC_Os01g40750.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGATCCGCGCGACGAGGACGCCGACCACCCGGCACCACCCATGGGCAAAG GTGACATCGACGAGGATAGTGATGATGATGGTTACGCAGACGAGGAGACAAEST: gi|88431398|gb|CI576928.1|CI576928
genomic: CGATCCGCGCGACGAGGACGCCGACCACCCGGCACCACCCATGGGCAAAGgtgcatcctc ... atgttgatagGTGACATCGACGAGGATAGTGATGATGATGGTTACGCAGACGAGGAGACAA
EST: CGATCCGCGCGACGAGGACGCCGACCACCCGGCACCACCCATGGGCAAAG GTGACATCGACGAGGATAGTGATGATGATGGTTACGCAGACGAGGAGACAAEST: gi|58597958|gb|CK008486.1|CK008486
genomic: CGATCCGCGCGACGAGGACGCCGACCACCCGGCACCACCCATGGGCAAAGgtgcatcctc ... atgttgatagGTGACATCGACGAGGATAGTGATGATGATGGTTACGCAGACGAGGAGACAA
EST: CGATCCGCGCGACGAGGACGCCGACCACCCGGCACCACCCATGGGCAAAG GTGACATCGACGAGGATAGTGATGATGATGGTTACGCAGACGAGGAGACAAEST: gi|218483125|gb|FG965062.1|FG965062
genomic: CGATCCGCGCGACGAGGACGCCGACCACCCGGCACCACCCATGGGCAAAGgtgcatcctc ... atgttgatagGTGACATCGACGAGGATAGTGATGATGATGGTTACGCAGACGAGGAGACAA
EST: CGATCCGCGCGACGAGGACGCCGACCACCCGGCACCACCCATGGGC-AAG GTGACATCGACGAGGATAGTGATGATGATGGTTACGCAGACGAGGAGACAAEST: gi|29662408|gb|CB658683.1|CB658683
genomic: CGATCCGCGCGACGAGGACGCCGACCACCCGGCACCACCCATGGGCAAAGgtgcatcctc ... atgttgatagGTGACATCGACGAGGATAGTGATGATGATGGTTACGCAGACGAGGAGACAA
EST: CGATCCGCGCGACGAGGACGCCGACCACCCGGCACCACCCATGGGCAAAG GTGACATCGACGAGGATAGTGATGATGATGGTTACGCAGACGAGGAGACAAEST: gi|88590399|gb|CI709248.1|CI709248
genomic: CGATCCGCGCGACGAGGACGCCGACCACCCGGCACCACCCATGGGCAAAGgtgcatcctc ... atgttgatagGTGACATCGACGAGGATAGTGATGATGATGGTTACGCAGACGAGGAGACAA
EST: CGATCCGCGCGACGAGGACGCCGACCACCCGGCACCACCCATGGGCAAAG GTGACATCGACGAGGATAGTGATGATGATGGTTACGCAGACGAGGAGEST: gi|88342520|gb|CI637096.1|CI637096
genomic: CGATCCGCGCGACGAGGACGCCGACCACCCGGCACCACCCATGGGCAAAGgtgcatcctc ... atgttgatagGTGACATCGACGAGGATAGTGATGATGATGGTTACGCAGACGAGGAG
EST: CGATCCGCGCGACGAGGACGCCGACCACCCGGCACCACCCATGGGCAAAG GTGACATCGACGAGGATAGTGATGATGATGGTTACGCAGACGAGGAGACAAEST: gi|88720084|gb|CI745174.1|CI745174
genomic: CGATCCGCGCGACGAGGACGCCGACCACCCGGCACCACCCATGGGCAAAGgtgcatcctc ... atgttgatagGTGACATCGACGAGGATAGTGATGATGATGGTTACGCAGACGAGGAGACAA
EST: CGATCCGCGCGACGAGGACGCCGACCACCCGGCACCACCCATGGGCAAAG GTGACATCGACGAGGATAGTGATGATGATGGTTACGCAGACGAGGAGACAAEST: gi|88340809|gb|CI636969.1|CI636969
genomic: CGATCCGCGCGACGAGGACGCCGACCACCCGGCACCACCCATGGGCAAAGgtgcatcctc ... atgttgatagGTGACATCGACGAGGATAGTGATGATGATGGTTACGCAGACGAGGAGACAA
EST: CGATCCGCGCGACGAGGACGCCGACCACCCGGCACCACCCATGGGCAAAG GTGACATCGACGAGGATAGTGATGATGATGGTTACGCAGACGAGGAGACAAEST: gi|86888392|gb|CI303674.1|CI303674
genomic: CGATCCGCGCGACGAGGACGCCGACCACCCGGCACCACCCATGGGCAAAGgtgcatcctc ... atgttgatagGTGACATCGACGAGGATAGTGATGATGATGGTTACGCAGACGAGGAGACAA
EST: CGATCCGCGCGACGAGGACGCCGACCACCCGGCACCACCCATGGGCAAAG GTGACATCGACGAGGATAGTGATGATGATGGTTACGCAGACGAGGAGACAAEST: gi|88340005|gb|CI650452.1|CI650452
genomic: CGATCCGCGCGACGAGGACGCCGACCACCCGGCACCACCCATGGGCAAAGgtgcatcctc ... atgttgatagGTGACATCGACGAGGATAGTGATGATGATGGTTACGCAGACGAGGAGACAA
EST: CGATCCGCGCGACGAGGACGCCGACCACCCGGCACCACCCATGGGCAAAG GTGACATCGACGAGGATAGTGATGATGATGGTTACGCAGACGAGGAGACAAEST: gi|88570967|gb|CI662340.1|CI662340
genomic: CGATCCGCGCGACGAGGACGCCGACCACCCGGCACCACCCATGGGCAAAGgtgcatcctc ... atgttgatagGTGACATCGACGAGGATAGTGATGATGATGGTTACGCAGACGAGGAGACAA
EST: CGATCCGCGCGACGAGGACGCCGACCACCCGGCACCACCCATGGGCAAAG GTGACATCGACGAGGATAGTGATGATGATGGTTACGCAGACGAGGAGACAA
genomic: CGATCCGCGCGACGAGGACGCCGACCACCCGGCACCACCCATGGGCAAAGgtgcatcctc ... atgttgatagGTGACATCGACGAGGATAGTGATGATGATGGTTACGCAGACGAGGAGACAA
aattcagattcagatgacgtctttgcctcagccaactcacacaatatgttgatagGTGACATCGACGAGGATAGTGATGATGATGGTTACGCAGACGAGGAGACAACTTGCCCAG
aactcac putative branch site (score: 10)
aatatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctctccgtagaggccagagatgtaaaccatttctattatctgaaaaattcagattcagatgacgtctttgcctcagccaactcacacaatatgttgatagGTGACATCGACGAGGATAGTGATGATGATGGTTACGCAGACGAGGAGACAACTTGCCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - -aaaccat
- - - - - - - - - - - - - - - - - - - -ctgaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacacaa