1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTGACATCGACGAGGATAGTGATGATGATGGTTACGCAGACGAGGAGACAACTTGCCCAGgtaacactactaataatccagtagagagcttcgattccagattaaaagacgaacagatactatcgctattttaatttctcag
species | Oryza sativa |
transcript | LOC_Os01g40750.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CGAGGATAGTGATGATGATGGTTACGCAGACGAGGAGACAACTTGCCCAG GGCAGAACTTCACGEST: gi|88431398|gb|CI576928.1|CI576928
genomic: CGAGGATAGTGATGATGATGGTTACGCAGACGAGGAGACAACTTGCCCAGgtaacactac ... aatttctcagGGCAGAACTTCACG
EST: CGAGGATAGTGATGATGATGGTTACGCAGACGAGGAGACAACTTGCCCAG GGCAGAACTTCACGAAGGAGCAGGCAAAGGAAATAATTCGCAAEST: gi|58597958|gb|CK008486.1|CK008486
genomic: CGAGGATAGTGATGATGATGGTTACGCAGACGAGGAGACAACTTGCCCAGgtaacactac ... aatttctcagGGCAGAACTTCACGAAGGAGCAGGCAAAGGAAATAATTCGCAA
EST: CGAGGATAGTGATGATGATGGTTACGCAGACGAGGAGACAACTTGCCCAG GGCAGAACTTCACGAAGGAGCAGGCAAAGGAAATAATTCGCAAGTGGCTAGEST: gi|218483125|gb|FG965062.1|FG965062
genomic: CGAGGATAGTGATGATGATGGTTACGCAGACGAGGAGACAACTTGCCCAGgtaacactac ... aatttctcagGGCAGAACTTCACGAAGGAGCAGGCAAAGGAAATAATTCGCAAGTGGCTAG
EST: CGAGGATAGTGATGATGATGGTTACGCAGACGAGGAGACAACTTGCCCAG GGCAGAACTTCACGAAGGAGCAGGCAAAGGAAATAATTCGCAAGTGGCTAGEST: gi|29662408|gb|CB658683.1|CB658683
genomic: CGAGGATAGTGATGATGATGGTTACGCAGACGAGGAGACAACTTGCCCAGgtaacactac ... aatttctcagGGCAGAACTTCACGAAGGAGCAGGCAAAGGAAATAATTCGCAAGTGGCTAG
EST: CGAGGATAGTGATGATGATGGTTACGCAGACGAGGAGACAACTTGCCCAG GGCAGAACTTCACGAAGGAGCAGGCAAAGGAAATAATTCGCAAGTGGCTAGEST: gi|88342520|gb|CI637096.1|CI637096
genomic: CGAGGATAGTGATGATGATGGTTACGCAGACGAGGAGACAACTTGCCCAGgtaacactac ... aatttctcagGGCAGAACTTCACGAAGGAGCAGGCAAAGGAAATAATTCGCAAGTGGCTAG
EST: CGAGGATAGTGATGATGATGGTTACGCAGACGAGGAGACAACTTGCCCAG GGCAGAACTTCACGEST: gi|86888392|gb|CI303674.1|CI303674
genomic: CGAGGATAGTGATGATGATGGTTACGCAGACGAGGAGACAACTTGCCCAGgtaacactac ... aatttctcagGGCAGAACTTCACG
EST: CGAGGATAGTGATGATGATGGTTACGCAGACGAGGAGACAACTTGCCCAG GGCAGAACTTCACGAAAGAGCAGGCEST: gi|88340005|gb|CI650452.1|CI650452
genomic: CGAGGATAGTGATGATGATGGTTACGCAGACGAGGAGACAACTTGCCCAGgtaacactac ... aatttctcagGGCAGAACTTCACGAAGGAGCAGGC
EST: CGAGGATAGTGATGATGATGGTTACGCAGACGAGGAGACAACTTGCCCAG GGCAGAACTTCACGAAGGAGCAGGCAAAGGAAATAAT
genomic: CGAGGATAGTGATGATGATGGTTACGCAGACGAGGAGACAACTTGCCCAGgtaacactac ... aatttctcagGGCAGAACTTCACGAAGGAGCAGGCAAAGGAAATAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGACATCGACGAGGATAGTGATGATGATGGTTACGCAGACGAGGAGACAACTTGCCCAGgtaacactactaataatccagtagagagcttcgattccagattaaaagacgaacagatactatcgctattttaatttctcag
- - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - AGGAGA