1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaaatccatggatttggatgacggatctgtggttgcgcctcccatttttctttcaagatgagttgcgagctgtgtgccaaagaagcccatcatcgtctccatatcgcacagGGACAGGGTTGCTGAGAGCAGCAGCGCCACCAGCCCAACCGTGGTGATGGCTTCGTCGCCGGAGAAGAAGGATCCTCCTAGTTGTGGCTCTCGGGATTCC
species | Oryza sativa |
transcript | LOC_Os01g40750.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGAACGAAGTTGCCGCATCGGCGTCCCCTGCATCCCACCGCATCGAGAAG GGACAGGGTTGCTGAGAGCAGCAGCGCCACCAGCCCAACCGTGGTGATGGCEST: gi|88431398|gb|CI576928.1|CI576928
genomic: GGAACGAAGTTGCCGCATCGGCGTCCCCTGCATCCCACCGCATCGAGAAGgtaaatccat ... tatcgcacagGGACAGGGTTGCTGAGAGCAGCAGCGCCACCAGCCCAACCGTGGTGATGGC
EST: GGAACGAAGTTGCCGCATCGGCGTCCCCTGGATCCCACCGCATCGAGAAG GGACAGGGTTGCTGAGGGCAGCAGCGCCACCAGCCCAACCGTGGTGATGGCEST: gi|58597958|gb|CK008486.1|CK008486
genomic: GGAACGAAGTTGCCGCATCGGCGTCCCCTGCATCCCACCGCATCGAGAAGgtaaatccat ... tatcgcacagGGACAGGGTTGCTGAGAGCAGCAGCGCCACCAGCCCAACCGTGGTGATGGC
EST: AGTTGCCGCATCGGCGTCCCCTGCATCCCGCCGCATCGAGAAG GGACAGGGTTGCTGAGAGCAGCAGCGCCACCAGCCCAACCGTGGTGATGGCEST: gi|86850125|gb|CI303578.1|CI303578
genomic: AGTTGCCGCATCGGCGTCCCCTGCATCCCACCGCATCGAGAAGgtaaatccat ... tatcgcacagGGACAGGGTTGCTGAGAGCAGCAGCGCCACCAGCCCAACCGTGGTGATGGC
EST: GGAACGAAGTTGCCGCATCGGCGTCCCCTGCATCCCACCGCATCGAGAAG GGACAGGGTTGCTGAGAGCAGCAGCGCCACCAGCCCAACCGTGGTGATGGCEST: gi|88590399|gb|CI709248.1|CI709248
genomic: GGAACGAAGTTGCCGCATCGGCGTCCCCTGCATCCCACCGCATCGAGAAGgtaaatccat ... tatcgcacagGGACAGGGTTGCTGAGAGCAGCAGCGCCACCAGCCCAACCGTGGTGATGGC
EST: GGAACGAAGTTGCCGCATCGGCGTCCCCTGCATCCCACCGCATCGAGAAG GGACAGGGTTGCTGAGAGCAGCAGCGCCACCAGCCCAACCGTGGTGATGGCEST: gi|88342520|gb|CI637096.1|CI637096
genomic: GGAACGAAGTTGCCGCATCGGCGTCCCCTGCATCCCACCGCATCGAGAAGgtaaatccat ... tatcgcacagGGACAGGGTTGCTGAGAGCAGCAGCGCCACCAGCCCAACCGTGGTGATGGC
EST: GGAACGAAGTTGCCGCATCGGCGTCCCCTGCATCCCACCGCATCGAGAAG GGACAGGGTTGCTGAGAGCAGCAGCGCCACCAGCCCAACCGTGGTGATGGCEST: gi|88720084|gb|CI745174.1|CI745174
genomic: GGAACGAAGTTGCCGCATCGGCGTCCCCTGCATCCCACCGCATCGAGAAGgtaaatccat ... tatcgcacagGGACAGGGTTGCTGAGAGCAGCAGCGCCACCAGCCCAACCGTGGTGATGGC
EST: GGAACGAAGTTGCCGCATCGGCGTCCCCTGCATCCCACCGCATCGAGAAG GGACAGGGTTGCTGAGAGCAGCAGCGCCACCAGCCCAACCGTGGTGATGGCEST: gi|88340809|gb|CI636969.1|CI636969
genomic: GGAACGAAGTTGCCGCATCGGCGTCCCCTGCATCCCACCGCATCGAGAAGgtaaatccat ... tatcgcacagGGACAGGGTTGCTGAGAGCAGCAGCGCCACCAGCCCAACCGTGGTGATGGC
EST: GGAACGAAGTTGCCGCATCGGCGTCCCCTGCATCCCACCGCATCGAGAAG GGACAGGGTTGCTGAGAGCAGCAGCGCCACCAGCCCAACCGTGGTGATGGCEST: gi|86888392|gb|CI303674.1|CI303674
genomic: GGAACGAAGTTGCCGCATCGGCGTCCCCTGCATCCCACCGCATCGAGAAGgtaaatccat ... tatcgcacagGGACAGGGTTGCTGAGAGCAGCAGCGCCACCAGCCCAACCGTGGTGATGGC
EST: GGAACGAAGTTGCCGCATCGGCGTCCCCTGCATCCCACCGCATCGAGAAG GGACAGGGTTGCTGAGAGCAGCAGCGCCACCAGCCCAACCGTGGTGATGGCEST: gi|88340005|gb|CI650452.1|CI650452
genomic: GGAACGAAGTTGCCGCATCGGCGTCCCCTGCATCCCACCGCATCGAGAAGgtaaatccat ... tatcgcacagGGACAGGGTTGCTGAGAGCAGCAGCGCCACCAGCCCAACCGTGGTGATGGC
EST: GGAACGAAGTTGCCGCATCGGCGTCCCCTGCATCCCACCGCATCGAGAAG GGACAGGGTTGCTGAGAGCAGCAGCGCCACCAGCCCAACCGTGGTGATGGCEST: gi|88570967|gb|CI662340.1|CI662340
genomic: GGAACGAAGTTGCCGCATCGGCGTCCCCTGCATCCCACCGCATCGAGAAGgtaaatccat ... tatcgcacagGGACAGGGTTGCTGAGAGCAGCAGCGCCACCAGCCCAACCGTGGTGATGGC
EST: GGAACGAAGTTGCCGCATCGGCGTCCCCTGCATCCCACCGCATCGAGAAG GGACAGGGTTGCTGAGAGCAGCAGCGCCACCAGCCCAACCGTGGTGATGGC
genomic: GGAACGAAGTTGCCGCATCGGCGTCCCCTGCATCCCACCGCATCGAGAAGgtaaatccat ... tatcgcacagGGACAGGGTTGCTGAGAGCAGCAGCGCCACCAGCCCAACCGTGGTGATGGC
gatgagttgcgagctgtgtgccaaagaagcccatcatcgtctccatatcgcacagGGACAGGGTTGCTGAGAGCAGCAGCGCCACCAGCCCAACCGTGGTGATGGCTTCGTCGCCGGAGAAGAAGGATCCTCCTAGTTGTGGCTCTCGGGATTCC
tctccat CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatccatggatttggatgacggatctgtggttgcgcctcccatttttctttcaagatgagttgcgagctgtgtgccaaagaagcccatcatcgtctccatatcgcacagGGACAGGGTTGCTGAGAGCAGCAGCGCCACCAGCCCAACCGTGGTGATGGCTTCGTCGCCGGAGAAGAAGGATCCTCCTAGTTGTGGCTCTCGGGATTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG