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ATGAATGGATCCTCCCAGTCAGTATCAAATGCAACAGATGTCCTGACCAAGACTAGTGGATCTGATAATGCCAATAAAGAAGgtaaaaactaagcagcatatttgtttttatcatgattatcgttatcctgaattcaaagtgttacattttttccccgcaatttggcagggatcgtgtgtta...
species | Oryza sativa |
transcript | LOC_Os01g40610.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AACAGATGTCCTGACCAAGACTAGTGGATCTGATAATGCCAATAAAGAAG GAAATAAGATCTGGCCATCTAAGATGCCAAAATTNATAGTCAAGCCAAAGTEST: gi|86504637|gb|CI147270.1|CI147270
genomic: AACAGATGTCCTGACCAAGACTAGTGGATCTGATAATGCCAATAAAGAAGgtaaaaacta ... tgcactgcagGAAATAAGATCTGGCCATCTAAGATGCCAAAATTTATAGTCAAGCCAAAGT
EST: AACAGATGTCCTGACCAAGACTAGTGGATCTGATAATGCCAATAAAGAAG GAAATAAGATCTGGCCATCTAAGATGCCAAAATTTATAGTCAAGCCAAAGTEST: gi|86413737|gb|CI067944.1|CI067944
genomic: AACAGATGTCCTGACCAAGACTAGTGGATCTGATAATGCCAATAAAGAAGgtaaaaacta ... tgcactgcagGAAATAAGATCTGGCCATCTAAGATGCCAAAATTTATAGTCAAGCCAAAGT
EST: AACAGATGTCCTGACCAAGACTAGTGGATCTGATAATGCCAATAAAGAAG GAAATAAGATCTGGCAATCTAAGATGCCAAAATTTATAGTCAAGCCAAAGTEST: gi|86501638|gb|CI144271.1|CI144271
genomic: AACAGATGTCCTGACCAAGACTAGTGGATCTGATAATGCCAATAAAGAAGgtaaaaacta ... tgcactgcagGAAATAAGATCTGGCCATCTAAGATGCCAAAATTTATAGTCAAGCCAAAGT
EST: AACAGATGTCCTGACCAAGACTAGTGGATCTGATAATGCCAATAAAGAAG GAAATAAGATCTGGCCATCTAAGATGCCAAAATTTATAGTCAAGCCAAAGTEST: gi|86900004|gb|CI300108.1|CI300108
genomic: AACAGATGTCCTGACCAAGACTAGTGGATCTGATAATGCCAATAAAGAAGgtaaaaacta ... tgcactgcagGAAATAAGATCTGGCCATCTAAGATGCCAAAATTTATAGTCAAGCCAAAGT
EST: AACAGATGTCCTGACCAAGACTAGTGGATCTGATAATGCCAATAAAGAAG GAAATAAGATCTGGCCATCTAAGATGCCAAAATTTATAGTCAAGCCAAAGTEST: gi|25806078|gb|CA762039.1|CA762039
genomic: AACAGATGTCCTGACCAAGACTAGTGGATCTGATAATGCCAATAAAGAAGgtaaaaacta ... tgcactgcagGAAATAAGATCTGGCCATCTAAGATGCCAAAATTTATAGTCAAGCCAAAGT
EST: AACAGATGTCCTGACCAAGACTAGTGGATCTGATAATGCCAATAAAGAAG GAAATAAGATCTGGCCATCTAAGATGCCAAAATTTATAGTCAAGCCAAAGTEST: gi|86260198|gb|CI066071.1|CI066071
genomic: AACAGATGTCCTGACCAAGACTAGTGGATCTGATAATGCCAATAAAGAAGgtaaaaacta ... tgcactgcagGAAATAAGATCTGGCCATCTAAGATGCCAAAATTTATAGTCAAGCCAAAGT
EST: AACAGATGTCCTGACCAAGACTAGTGGATCTGATAATGCCAATAAAGAAG GAAATAAGATCTGGCNATCTAAGATGCCAAAATTNATAGTCAAGCCAAAGTEST: gi|86431699|gb|CI085310.1|CI085310
genomic: AACAGATGTCCTGACCAAGACTAGTGGATCTGATAATGCCAATAAAGAAGgtaaaaacta ... tgcactgcagGAAATAAGATCTGGCCATCTAAGATGCCAAAATTTATAGTCAAGCCAAAGT
EST: AACAGATGTCCTGACCAAGACTAGTGGATCTGATAATGCCAATAAAGAAG GAAATAAGATCTGGCNATCTAAGATGCCAAAATTAATAGTCAAGCCAGAGTEST: gi|86887572|gb|CI294206.1|CI294206
genomic: AACAGATGTCCTGACCAAGACTAGTGGATCTGATAATGCCAATAAAGAAGgtaaaaacta ... tgcactgcagGAAATAAGATCTGGCCATCTAAGATGCCAAAATTTATAGTCAAGCCAAAGT
EST: AACAGATGTCCTGACCAAGACTAGTGGATCTGATAATGCCAATAAAGAAG GAAATAAGATCTGGCCATCTAAGATGCCAAAATTTATAGTCAAGCCAAAGTEST: gi|218489846|gb|FG955654.1|FG955654
genomic: AACAGATGTCCTGACCAAGACTAGTGGATCTGATAATGCCAATAAAGAAGgtaaaaacta ... tgcactgcagGAAATAAGATCTGGCCATCTAAGATGCCAAAATTTATAGTCAAGCCAAAGT
EST: AACAGATGTCCTGACCAAGACTAGTGGATCTGATAATGCCAATAAAGAAG GAAATAAGATCTGGCCATCTAAGATGCC
genomic: AACAGATGTCCTGACCAAGACTAGTGGATCTGATAATGCCAATAAAGAAGgtaaaaacta ... tgcactgcagGAAATAAGATCTGGCCATCTAAGATGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGAATGGATCCTCCCAGTCAGTATCAAATGCAACAGATGTCCTGACCAAGACTAGTGGATCTGATAATGCCAATAAAGAAGgtaaaaactaagcagcatatttgtttttatcatgattatcgttatcctgaattcaaagtgttacattttttccccgcaatttggcagggatcgtgtgtta
- - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tccccgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggcaggg