1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tatgatagcttccttacaagcatgggtggccatggtgtgtaatctgcctgcttaaatctcgcattgtttttctaacggtgataattttgggcaatgacagGAGGAGAAAACAGTAGCTGAGCTAGATGAAGAAGATGAAAAACTTATCAAATCAATCACTTTTCGA
species | Oryza sativa |
transcript | LOC_Os01g40610.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCTGCTCATGATAAG GAGGAGAAAACAGTAGCTGAGCTAGATGAAGAAGATGAAAAACTTATCAAAEST: gi|218489846|gb|FG955654.1|FG955654
genomic: TCTGCTCATGATAAGgtaagatctc ... gcaatgacagGAGGAGAAAACAGTAGCTGAGCTAGATGAAGAAGATGAAAAACTTATCAAA
EST: TCACAGTTGACCAGATGCTTGAAATTTTGAAGCGCTCTGCTCATGATAAG GAGGAGAAAACAGTAGCTGAGCTAGATGAAGAAGATGAAAAACTTATCAAA
genomic: TCACAGTTGACCAGATGCTTGAAATTTTGAAGCGCTCTGCTCATGATAAGgtaagatctc ... gcaatgacagGAGGAGAAAACAGTAGCTGAGCTAGATGAAGAAGATGAAAAACTTATCAAA
gcctgcttaaatctcgcattgtttttctaacggtgataattttgggcaatgacagGAGGAGAAAACAGTAGCTGAGCTAGATGAAGAAGATGAAAAACTTATCAAATCAATCACTTTTCGA
ttctaac putative branch site (score: 18)
tgataatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgatagcttccttacaagcatgggtggccatggtgtgtaatctgcctgcttaaatctcgcattgtttttctaacggtgataattttgggcaatgacagGAGGAGAAAACAGTAGCTGAGCTAGATGAAGAAGATGAAAAACTTATCAAATCAATCACTTTTCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - -aagcatg
- - - - - - - - - - - - - - gccatgg
- - - - - - - - - - - - - - - - - - - - - - tgcctgc