1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gtcaattttctatgctaatgtagagttattttcttatgcttccatttgatgtctcttgaatttatttgctttgttgactaacagttctattgttctgtagATGAATGGATCCTCCCAGTCAGTATCAAATGCAACAGATGTCCTGACCAAGACTAGTGGATCTGATAATGCCAATAAAGAAG
species | Oryza sativa |
transcript | LOC_Os01g40610.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTAGCACATCAAAG ATGAATGGATCCTCCCAGTCAGTATCAAATGCAACAGATGTCCTGACCAAGEST: gi|86501638|gb|CI144271.1|CI144271
genomic: GTAGCACATCAAAGgtacttagca ... tgttctgtagATGAATGGATCCTCCCAGTCAGTATCAAATGCAACAGATGTCCTGACCAAG
EST: AGTAGCACATCAAAG ATGAATGGATCCTCCCAGTCAGTATCAAATGCAACAGATGTCCTGACCAAGEST: gi|25806078|gb|CA762039.1|CA762039
genomic: AGTAGCACATCAAAGgtacttagca ... tgttctgtagATGAATGGATCCTCCCAGTCAGTATCAAATGCAACAGATGTCCTGACCAAG
EST: ACGATGATGAAGATTTGGTGATACTGGGCCAGTTGAGTAGCACATCAAAG ATGAATGGATCCTCCCAGTCAGTATCAAATGCAACAGATGTCCTGACCAAGEST: gi|86260198|gb|CI066071.1|CI066071
genomic: ACGATGATGAAGATTTGGTGATACCGGGCCAGTCGAGTAGCACATCAAAGgtacttagca ... tgttctgtagATGAATGGATCCTCCCAGTCAGTATCAAATGCAACAGATGTCCTGACCAAG
EST: GAGTAGCACATCAAAG ATGAATGGATCCTCCCAGTCAGTATCAAATGCAACAGATGTCCTGACCAAGEST: gi|86887572|gb|CI294206.1|CI294206
genomic: GAGTAGCACATCAAAGgtacttagca ... tgttctgtagATGAATGGATCCTCCCAGTCAGTATCAAATGCAACAGATGTCCTGACCAAG
EST: ACGATGATGAAGATTTGGTGATACCGGGCCAGTCGAGTAGCACATCAAAG ATGAATGGATCCTCCCAGTCAGTATCAAATGCAACAGATGTCCTGACCAAGEST: gi|218489846|gb|FG955654.1|FG955654
genomic: ACGATGATGAAGATTTGGTGATACCGGGCCAGTCGAGTAGCACATCAAAGgtacttagca ... tgttctgtagATGAATGGATCCTCCCAGTCAGTATCAAATGCAACAGATGTCCTGACCAAG
EST: ACGATGATGAAGATTTGGTGATACCGGGCCAGTTGAGTAGCACATCAAAG ATGAATGGATCCTCCCAGTCAGTATCAAATGCAACAGATGTCCTGACCAAG
genomic: ACGATGATGAAGATTTGGTGATACCGGGCCAGTCGAGTAGCACATCAAAGgtacttagca ... tgttctgtagATGAATGGATCCTCCCAGTCAGTATCAAATGCAACAGATGTCCTGACCAAG
ttgatgtctcttgaatttatttgctttgttgactaacagttctattgttctgtagATGAATGGATCCTCCCAGTCAGTATCAAATGCAACAGATGTCCTGACCAAGACTAGTGGATCTGATAATGCCAATAAAGAAG
gactaac putative branch site (score: 27)
ttctatt putative PPT
tcttgaatttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcaattttctatgctaatgtagagttattttcttatgcttccatttgatgtctcttgaatttatttgctttgttgactaacagttctattgttctgtagATGAATGGATCCTCCCAGTCAGTATCAAATGCAACAGATGTCCTGACCAAGACTAGTGGATCTGATAATGCCAATAAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - tctatgc
- - - - - - - - - - - - - - - - - - tgcttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actaaca