1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tctgttcttttgtaattgtagaatttcataccaatggtgtatctgggctgctagttttaatgctaatttatgctaatgtgatttcatttcttgtgtgcagAAATACCTGGGGATACAAATATTTAGGTTTTACTTCAAGTGTACGAAATGTTCAGCTGAGATAACTTTCAAAACGGACCCTCAGAATTCTGATTACACGG
species | Oryza sativa |
transcript | LOC_Os01g40610.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTACAAGGGCACCAAGTTCAACTCGCGCAAGGAGGACGTCGAAGGCGAG AAATACCTGGGGATACAAATATTTAGGTTTTACTTCAAGTGTACGAAATGTEST: gi|38469933|gb|CF954064.1|CF954064
genomic: TCTACAAGGGCACCAAGTTCAACTCGCGCAAGGAGGACGTCGAAGGCGAGgtaggttggc ... ttgtgtgcagAAATACCTGGGGATACAAATATTTAGGTTTTACTTCAAGTGTACGAAATGT
EST: TCTACAAGGGCACCAAGTTCAACTCGCGCAAGGAGGACGTCGAAGGCGAG AAATACCTGGGGATACAAATATTTAGGTTTTACTTCAAGTGTACGAAATGTEST: gi|58601744|gb|CK012272.1|CK012272
genomic: TCTACAAGGGCACCAAGTTCAACTCGCGCAAGGAGGACGTCGAAGGCGAGgtaggttggc ... ttgtgtgcagAAATACCTGGGGATACAAATATTTAGGTTTTACTTCAAGTGTACGAAATGT
EST: TCTACAAGGGCACCAAGTTCAACTCGCGCAAGGAGGACGTCGAAGGCGAG AAATACCTGGGGATACAAATATTTAGGTTTTACTTCAAGTGTACGAAATGT
genomic: TCTACAAGGGCACCAAGTTCAACTCGCGCAAGGAGGACGTCGAAGGCGAGgtaggttggc ... ttgtgtgcagAAATACCTGGGGATACAAATATTTAGGTTTTACTTCAAGTGTACGAAATGT
ggctgctagttttaatgctaatttatgctaatgtgatttcatttcttgtgtgcagAAATACCTGGGGATACAAATATTTAGGTTTTACTTCAAGTGTACGAAATGTTCAGCTGAGATAACTTTCAAAACGGACCCTCAGAATTCTGATTACACGG
tgctaat putative branch site (score: 11)
tttcatttctt putative PPT
ttttaatgctaattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgttcttttgtaattgtagaatttcataccaatggtgtatctgggctgctagttttaatgctaatttatgctaatgtgatttcatttcttgtgtgcagAAATACCTGGGGATACAAATATTTAGGTTTTACTTCAAGTGTACGAAATGTTCAGCTGAGATAACTTTCAAAACGGACCCTCAGAATTCTGATTACACGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- tgttctt
- - - - - - - - - - - - - -ataccaa
- - - - - - - - - - - - - - - - - - gtgtatc
- - - - - - - - - - - - - - - - - - - - - - - gctgcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctaatg