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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atactttgacataaatatttgttctacgactacttgaaacttttttggaatataagaatatgccttttacataattatcttgacaaattggcaaatgcagTGCGGTTGCTCGGCAAACTTCAAGATGGAACTGTTTTTGATCGTAGAGGTTACGGCGACGATGAACCGTTCGAGTTCGTGGTAGATGAAG

Basic information

species Oryza sativa
transcript LOC_Os01g38229.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4714926|gb|AU056043.1|AU056043
EST:     GATAGGGAACTCACAGAGGATACACACACAAAGTCAAGCTGTGGTGAAAG                         TGCGGTTGCTCGGCAAACTTCAAGATGGAACTGTTTTTGATCGTAGAGGTT
genomic: GATAGGGAACTCACAGAGGATACACACACAAAGTCAAGCTGTGGTGAAAGgtactgcttg ... gcaaatgcagTGCGGTTGCTCGGCAAACTTCAAGATGGAACTGTTTTTGATCGTAGAGGTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggaatataagaatatgccttttacataattatcttgacaaattggcaaatgcagTGCGGTTGCTCGGCAAACTTCAAGATGGAACTGTTTTTGATCGTAGAGGTTACGGCGACGATGAACCGTTCGAGTTCGTGGTAGATGAAG
                                tcttgac  putative branch site (score: 3)
 ttttacataattatct  TA-rich tract