1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TTCACTTCACTGGAGAACTAGTTGACGGTACGCAGTTCGTGTCAAGCCGAGAAAATGACATTCCAGAGAGGTTTATACTGGGGCAAGgtataaaactatacatatgcaaatttatgttatttttaggggaaatttccctaatcttattcttgagttgctctaacttttatccattatataataactatctgctgacctggtcaaaagacagaccaatgatttatcgatctttattttcctctcctttttgtag
species | Oryza sativa |
transcript | LOC_Os01g38229.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CGTGTCAAGCCGAGAAAATGACATTCCAGAGAGGTTTATACTGGGGCAAG AGGATGTGATGCATGGTTTCAACTTAGCTGTCAGTTCGATGCAACCAGGGGEST: gi|88407028|gb|CI581115.1|CI581115
genomic: CGTGTCAAGCCGAGAAAATGACATTCCAGAGAGGTTTATACTGGGGCAAGgtataaaact ... ctttttgtagAGGATGTGATGCATGGTTTCAACTTAGCTGTCAGTTCGATGCAACCAGGGG
EST: CGTGTCAAGCCGAGAAACTGACATTCCAGAGAGGTTTATACTGGGGGAAG AGGATGTGATGCATGGTTT-AACCTTAGCTGTCAGTTCGATGCAACCAGGGEST: gi|33676436|gb|CF304675.1|CF304675
genomic: CGTGTCAAGCCGAGAAAATGACATTCCAGAGAGGTTTATACTGGGGCAAGgtataaaact ... ctttttgtagAGGATGTGATGCATGGTTTCAAC-TTAGCTGTCAGTTCGATGCAACCAGGG
EST: CGTGTCAAGCCGAGAAAATGACATTCCAGAGAGGTTTATACTGGGGCAAG AGGATGTGATGCATGGTTTCAACTTAGCTGTCAGTTCGATGCAACCAGGGGEST: gi|88367669|gb|CI568441.1|CI568441
genomic: CGTGTCAAGCCGAGAAAATGACATTCCAGAGAGGTTTATACTGGGGCAAGgtataaaact ... ctttttgtagAGGATGTGATGCATGGTTTCAACTTAGCTGTCAGTTCGATGCAACCAGGGG
EST: GTGTCAAGCCGAGAAAATGAGC-TTC-AGAGAGGTTTATACTGGGGCA-G AGGATGTGATGCATGGTTTCA-CTTAGCTGTCAGEST: gi|29632144|gb|CB637153.1|CB637153
genomic: GTGTCAAGCCGAGAAAATGA-CATTCCAGAGAGGTTTATACTGGGGCAAGgtataaaact ... ctttttgtagAGGATGTGATGCATGGTTTCAACTTAGCTGTCAG
EST: CGTGTCAAGCCGAGAAAATGACATTCCAGAGAGGTTTATACTGGGGCAAG AGGATGTGATGCATGGTTTCAACTTAGCTGTCAGTTCGATGCAACCAGGGG
genomic: CGTGTCAAGCCGAGAAAATGACATTCCAGAGAGGTTTATACTGGGGCAAGgtataaaact ... ctttttgtagAGGATGTGATGCATGGTTTCAACTTAGCTGTCAGTTCGATGCAACCAGGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCACTTCACTGGAGAACTAGTTGACGGTACGCAGTTCGTGTCAAGCCGAGAAAATGACATTCCAGAGAGGTTTATACTGGGGCAAGgtataaaactatacatatgcaaatttatgttatttttaggggaaatttccctaatcttattcttgagttgctctaacttttatccattatataataactatctgctgacctggtcaaaagacagaccaatgatttatcgatctttattttcctctcctttttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG