Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCACAGCTGGAAGAAATGTGGATTTCCTGCACTTTTAAAGCGGCTAAGTGCGCAATCCAGCTAGGGTGCTACATGCAAGCATCGTGCTATTACAGCGAGgtaaattttatgtaaagaaaatttcccgcgtgtttttactttgtagagtaatctttacacactactttaaaaaaggctttaggtcccagttgccaacccc...

Basic information

species Oryza sativa
transcript LOC_Os01g38229.2
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|157650203|gb|EX449837.1|EX449837
EST:     GCGCAATCCAGCTAGGGTGCTACATGCAAGCATCGTGCTATTACAGCGAG                         GTGCTGAACTACGATGTGGCTAATGTGCAAGCCCAGCAGCAGCAAACGTTG
genomic: GCGCAATCCAGCTAGGGTGCTACATGCAAGCATCGTGCTATTACAGCGAGgtaaatttta ... aacaatacagGTGCTGAACTACGATGTGGCTAATGTGCAAGCCCAGCAGCAGCAAACGTTG
EST: gi|157651204|gb|EX450838.1|EX450838
EST:     GCGCAATCCAGCTAGGGTGCTACATGCAAGCATCGTGCTATTACAGCGAG                         GTGCTGAACTACGATGTGGCTAATGTGCAAGCCCAGCAGCAGCAAACGTTG
genomic: GCGCAATCCAGCTAGGGTGCTACATGCAAGCATCGTGCTATTACAGCGAGgtaaatttta ... aacaatacagGTGCTGAACTACGATGTGGCTAATGTGCAAGCCCAGCAGCAGCAAACGTTG
EST: gi|55827806|gb|AU056044.2|AU056044
EST:     GCGCAATCCAGCTAGGGTGCTACATGCAAGCATCGTGCTATTACAGCGAG                         GTGCTGAACTACGATGTGGCTAATGTGCAAGCCCAGCAGCAGCAAACGTTG
genomic: GCGCAATCCAGCTAGGGTGCTACATGCAAGCATCGTGCTATTACAGCGAGgtaaatttta ... aacaatacagGTGCTGAACTACGATGTGGCTAATGTGCAAGCCCAGCAGCAGCAAACGTTG
EST: gi|29656736|gb|CB653011.1|CB653011
EST:     GCGCAATCCAGCTAGGGTGCTACATGCAAGCATCGTGCTATTACAGCGAG                         GTGCTGAACTACGATGTGGCTAATGTGCAAGCCCAGCAGCAGCAAACGTTG
genomic: GCGCAATCCAGCTAGGGTGCTACATGCAAGCATCGTGCTATTACAGCGAGgtaaatttta ... aacaatacagGTGCTGAACTACGATGTGGCTAATGTGCAAGCCCAGCAGCAGCAAACGTTG
EST: gi|88974555|gb|CI022096.1|CI022096
EST:     ACATGCAAGCATCGTGCTATTACAGCGAG                         GTGCTGAACTACGATGTGGCTAATGTGCAAGCCCAGCAGCAGCAAACGTTG
genomic: ACATGCAAGCATCGTGCTATTACAGCGAGgtaaatttta ... aacaatacagGTGCTGAACTACGATGTGGCTAATGTGCAAGCCCAGCAGCAGCAAACGTTG