1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttgtaccataaataggttgagttttacaaaatttactgaaaaaactaatgctaaattcctaaagctttaatttatggtccgtgcaaatgttcatgcgcagTTCACTTCACTGGAGAACTAGTTGACGGTACGCAGTTCGTGTCAAGCCGAGAAAATGACATTCCAGAGAGGTTTATACTGGGGCAAG
species | Oryza sativa |
transcript | LOC_Os01g38229.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGACCATATTCGCGCCAAGGACAAGAACTTTTACTGCTTTGAGGTCCAAG TTCACTTCACTGGAGAACTAGTTGACGGTACGCAGTTCGTGTCAAGCCGAGEST: gi|2427665|gb|C72128.1|C72128
genomic: GGACCATATTCGCGCCAAGGACAAGAACTTTTACTGCTTTGAGGTCCAAGgtaacaattg ... tcatgcgcagTTCACTTCACTGGAGAACTAGTTGACGGTACGCAGTTCGTGTCAAGCCGAG
EST: GGACCATATTCGCGCCAAGGACAAGAACTTTTACTGCTTTGAGGTCCAAG TTCACTTCACTGGAGAACTAGTTGACGGTACGCAGTTCGTGTCAAGCCGAGEST: gi|88407028|gb|CI581115.1|CI581115
genomic: GGACCATATTCGCGCCAAGGACAAGAACTTTTACTGCTTTGAGGTCCAAGgtaacaattg ... tcatgcgcagTTCACTTCACTGGAGAACTAGTTGACGGTACGCAGTTCGTGTCAAGCCGAG
EST: GGACCATATTCGCGCCAAGGACAAGAACTTTTACTGCTTTGAGGTCCAAG TTCACTTCACTGGAGAACTAGTTGACGGTACGCAGTTCGTGTCAAGCCGAGEST: gi|33676380|gb|CF304619.1|CF304619
genomic: GGACCATATTCGCGCCAAGGACAAGAACTTTTACTGCTTTGAGGTCCAAGgtaacaattg ... tcatgcgcagTTCACTTCACTGGAGAACTAGTTGACGGTACGCAGTTCGTGTCAAGCCGAG
EST: GGACCATATTCGCGCCAAGGACAAGAACTTTTACTGCTTTGAGGTCCAAG TTCACTTCACTGGAGAACTAGTTGACGGTACGCAGTTCGTGTCAAGCCGAGEST: gi|33676436|gb|CF304675.1|CF304675
genomic: GGACCATATTCGCGCCAAGGACAAGAACTTTTACTGCTTTGAGGTCCAAGgtaacaattg ... tcatgcgcagTTCACTTCACTGGAGAACTAGTTGACGGTACGCAGTTCGTGTCAAGCCGAG
EST: GGACCATATTCGCGCCAAGGACAAGAACTTTTACTGCTTTGAGGTCCAAG TTCACTTCACTGGAGAACTAGTTGACGGTACGCAGTTCGTGTCAAGCCGAGEST: gi|88367669|gb|CI568441.1|CI568441
genomic: GGACCATATTCGCGCCAAGGACAAGAACTTTTACTGCTTTGAGGTCCAAGgtaacaattg ... tcatgcgcagTTCACTTCACTGGAGAACTAGTTGACGGTACGCAGTTCGTGTCAAGCCGAG
EST: GGACCATATTCGCGCCAAGGACAAGAACTTTTACTGCTTTGAGGTCCAAG TTCACTTCACTGGAGAACTAGTTGACGGTACGCAGTTCGTGTCAAGCCGAGEST: gi|88405610|gb|CI588816.1|CI588816
genomic: GGACCATATTCGCGCCAAGGACAAGAACTTTTACTGCTTTGAGGTCCAAGgtaacaattg ... tcatgcgcagTTCACTTCACTGGAGAACTAGTTGACGGTACGCAGTTCGTGTCAAGCCGAG
EST: GGACCATATTCGCGCCAAGGACAAGAACTTTTACTGCTTTGAGGTCCAAG TTCACTTCACTGGAGAACTAGTTGACGGTACGCAGTTCGTGTCAAGCCGEST: gi|88410785|gb|CI578591.1|CI578591
genomic: GGACCATATTCGCGCCAAGGACAAGAACTTTTACTGCTTTGAGGTCCAAGgtaacaattg ... tcatgcgcagTTCACTTCACTGGAGAACTAGTTGACGGTACGCAGTTCGTGTCAAGCCG
EST: GGACCATATTCGCGCCAAGGACAAGAACTTTTACTGCTTTGAGGTCCAAG TTCACTTCACTGGAGAACTAGTTGACGGEST: gi|88370128|gb|CI585133.1|CI585133
genomic: GGACCATATTCGCGCCAAGGACAAGAACTTTTACTGCTTTGAGGTCCAAGgtaacaattg ... tcatgcgcagTTCACTTCACTGGAGAACTAGTTGACGG
EST: GGACCATATTCGCGCCAAGGACAAGAACTTTTACTGCTTTGAGGTCCAAG TTCACTTCACTGGAGAACTAGTTGACGGTACGCAGTTCGTGTCAAGCCGAGEST: gi|88762537|gb|CI772093.1|CI772093
genomic: GGACCATATTCGCGCCAAGGACAAGAACTTTTACTGCTTTGAGGTCCAAGgtaacaattg ... tcatgcgcagTTCACTTCACTGGAGAACTAGTTGACGGTACGCAGTTCGTGTCAAGCCGAG
EST: GGACCATATTCGCGCCAAGGACAAGAACTTTTACTGCTTTGAGGTCCAAG TTCACTTCACTGGAGAACTAGEST: gi|88417649|gb|CI581672.1|CI581672
genomic: GGACCATATTCGCGCCAAGGACAAGAACTTTTACTGCTTTGAGGTCCAAGgtaacaattg ... tcatgcgcagTTCACTTCACTGGAGAACTAG
EST: GGACCATATTCGCGCCAAGGACAAGAACTTTTACTGCTTTGAGGTCCAAG TTCACTTCACTGGAGAACTACTTGACGGTACGCAGTTCGTGTGAAGCCGAGEST: gi|29632144|gb|CB637153.1|CB637153
genomic: GGACCATATTCGCGCCAAGGACAAGAACTTTTACTGCTTTGAGGTCCAAGgtaacaattg ... tcatgcgcagTTCACTTCACTGGAGAACTAGTTGACGGTACGCAGTTCGTGTCAAGCCGAG
EST: GGACCATATTCGCGCCAAGGACAAGAACTTTTACTGCTTTGAGGTCCAAG TTCACTTCACTGGAGAACTAGTTGACGGTACGCAGTTCGTGTCAAGCCGAG
genomic: GGACCATATTCGCGCCAAGGACAAGAACTTTTACTGCTTTGAGGTCCAAGgtaacaattg ... tcatgcgcagTTCACTTCACTGGAGAACTAGTTGACGGTACGCAGTTCGTGTCAAGCCGAG
taatgctaaattcctaaagctttaatttatggtccgtgcaaatgttcatgcgcagTTCACTTCACTGGAGAACTAGTTGACGGTACGCAGTTCGTGTCAAGCCGAGAAAATGACATTCCAGAGAGGTTTATACTGGGGCAAG
taaagctttaatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtaccataaataggttgagttttacaaaatttactgaaaaaactaatgctaaattcctaaagctttaatttatggtccgtgcaaatgttcatgcgcagTTCACTTCACTGGAGAACTAGTTGACGGTACGCAGTTCGTGTCAAGCCGAGAAAATGACATTCCAGAGAGGTTTATACTGGGGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG