1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgtggtttttaattttcttctcgtcttatccatgccataataagaagatatcagctgtaatttgaggtggtatttgtttgattagGAATGGGAGCTGGCAGAGAATTTGCAGGGAGTTCTTGAGTACCAAACAAG
species | Oryza sativa |
transcript | LOC_Os01g37832.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGACTTCAATGATGCTCAAAATATGCAACCTGTGCAG GAATGGGAGCTGGCAGAGAATTTGCAGGGAGTTCTTGAGTACCAAACAAGEST: gi|58678373|gb|CK067060.1|CK067060
genomic: TGACTTCAATGATGCTCAAAATATGCAACCTGTGCAGgtgtggtttt ... gtttgattagGAATGGGAGCTGGCAGAGAATTTGCAGGGAGTTCTTGAGTACCAAACAAG
EST: ACCGAGAAGGCATTGACTTCAATGATGCTCAAAATATGCAACCTGTGCAG GAATGGGAGCTGGCAGAGAATTTGCAGGGAGTTCTTGAGTACCAAACAAGEST: gi|40724664|gb|CK431262.1|CK431262
genomic: ACCGAGAAGGCATTGACTTCAATGATGCTCAAAATATGCAACCTGTGCAGgtgtggtttt ... gtttgattagGAATGGGAGCTGGCAGAGAATTTGCAGGGAGTTCTTGAGTACCAAACAAG
EST: ACCGAGAAGGCATTGACTTCAATGATGCTCAAAATATGCAACCTGTGCAG GAATGGGAGCTGGCAGAGAATTTGCAGGGAGTTCTTGAGTACCAAACAAGEST: gi|58594516|gb|CF992824.1|CF992824
genomic: ACCGAGAAGGCATTGACTTCAATGATGCTCAAAATATGCAACCTGTGCAGgtgtggtttt ... gtttgattagGAATGGGAGCTGGCAGAGAATTTGCAGGGAGTTCTTGAGTACCAAACAAG
EST: ACCGAGAAGGCATTGACTTCAATGATGCTCAAAATATGCAACCTGTGCAG GAATGGGAGCTGGCAGAGAATTTGCAGGGAGTTCTTGAGTACCAAACAAG
genomic: ACCGAGAAGGCATTGACTTCAATGATGCTCAAAATATGCAACCTGTGCAGgtgtggtttt ... gtttgattagGAATGGGAGCTGGCAGAGAATTTGCAGGGAGTTCTTGAGTACCAAACAAG
catgccataataagaagatatcagctgtaatttgaggtggtatttgtttgattagGAATGGGAGCTGGCAGAGAATTTGCAGGGAGTTCTTGAGTACCAAACAAG
tttgttt CT-rich tract
ataataagaagatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtggtttttaattttcttctcgtcttatccatgccataataagaagatatcagctgtaatttgaggtggtatttgtttgattagGAATGGGAGCTGGCAGAGAATTTGCAGGGAGTTCTTGAGTACCAAACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT