1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGAAGGAGGGGAGAGGATGGCGTGCCTGCACGACCACAGCTGCGAGGATCACAACTGCGCCGCCGACTGGTCGCTCTTCAACCACATCGACGTCCCCAAGgtccctctctctctctgcccctcgctcgcctggttgatcagatggattggcccccgtatcactcacttcgtttgatgttcctctttgaaattgctgttga...
species | Oryza sativa |
transcript | LOC_Os01g37832.3 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACAACTGCGCCGCCGACTGGTCGCTCTTCAACCACATCGACGTCCCCAAG GTGGTGGCTCTGAACGAATCTGTGGCGGGGAGCGTCAAGTCGGTCTTCAAGEST: gi|33676798|gb|CF305037.1|CF305037
genomic: ACAACTGCGCCGCCGACTGGTCGCTCTTCAACCACATCGACGTCCCCAAGgtccctctct ... atatatacagGTGGTGGCTCTGAACGAATCTGTGGCGGGGAGCGTCAAGTCGGTCTTCAAG
EST: ACAACTGCGCCGCCGACTGGTCGCTCTTCAACCACATCGACGTCCCCAAG GTGGTGGCTCTGAACGAATCTEST: gi|33675120|gb|CF303359.1|CF303359
genomic: ACAACTGCGCCGCCGACTGGTCGCTCTTCAACCACATCGACGTCCCCAAGgtccctctct ... atatatacagGTGGTGGCTCTGAACGAATCT
EST: ACAACTGCGCCGCCGACTGGTCGCTCTTCAACCACATCGACGTCCCCAAG GTGGTGGCTCTGAACGAATCTGTGGCGGGGAGCGTCAAGTCGGTCTTCAAG
genomic: ACAACTGCGCCGCCGACTGGTCGCTCTTCAACCACATCGACGTCCCCAAGgtccctctct ... atatatacagGTGGTGGCTCTGAACGAATCTGTGGCGGGGAGCGTCAAGTCGGTCTTCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAAGGAGGGGAGAGGATGGCGTGCCTGCACGACCACAGCTGCGAGGATCACAACTGCGCCGCCGACTGGTCGCTCTTCAACCACATCGACGTCCCCAAGgtccctctctctctctgcccctcgctcgcctggttgatcagatggattggcccccgtatcactcacttcgtttgatgttcctctttgaaattgctgttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctcgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccccgt