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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtctcagagctctatcttttctgttacttgactcatctatttgtccctcttaacagaatgtaatggtacaaaatttattaagaataccttgacatatgttacagGTTTATCAACCGAGAAGGCATTGACTTCAATGATGCTCAAAATATGCAACCTGTGCAG

Basic information

species Oryza sativa
transcript LOC_Os01g37832.3
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g37832.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G090647_T04 (Zea mays), 3'ss of exon 3
gttagtctcagagctctatcttttctgttacttgactcatctatttgtccctcttaacagaatgtaatggtacaaaatttattaagaat-accttgacatatgttacagGTTTATCAACCGAGAAGGCATTGACTTCAATGATGCTCAAAATATGCAACCTGTGCAG
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gttagttttagagatatagcttttattttccttg-------tccttctctttctca-----------tggcatgatatttatgaaaaattaccttgacataa--tccagGTTTATCAATAGAGAAGGTATTGACTTTTCTGATGCTCAAAACATGCAGCCAGTGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58678373|gb|CK067060.1|CK067060
EST:     ATCTCTGTTGTTGGTGGTGCAGATGGAACAAGCCCTTCTAGAATGAGAGC                         GTTTATCAACCGAGAAGGCATTGACTTCAATGATGCTCAAAATATGCAACC
genomic: ATCTCTGTTGTTGGTGGTGCAGATGGAACAAGCCCTTCTAGAATGAGAGCgttagtctca ... tatgttacagGTTTATCAACCGAGAAGGCATTGACTTCAATGATGCTCAAAATATGCAACC
EST: gi|3760092|gb|C97350.1|C97350
EST:     ATCTCTGTTGTTGGTGGTGCAGATGGAACAAGCCCTTCTAGAATGAGAGC                         GTTTATCAACCGAGAAGGCATTGACTTCAATGATGCTCAAAATATGCAACC
genomic: ATCTCTGTTGTTGGTGGTGCAGATGGAACAAGCCCTTCTAGAATGAGAGCgttagtctca ... tatgttacagGTTTATCAACCGAGAAGGCATTGACTTCAATGATGCTCAAAATATGCAACC
EST: gi|40724664|gb|CK431262.1|CK431262
EST:     CTCTGTTGTTGGTGGTGCAAGATGGAACAAGCCCTTTCTAGAATGAGAGC                         GTTTATCAACCGAGAAGGCATTGACTTCAATGATGCTCAAAATATGCAACC
genomic: CTCTGTTGTTGGTGGTGC-AGATGGAACAAGCCC-TTCTAGAATGAGAGCgttagtctca ... tatgttacagGTTTATCAACCGAGAAGGCATTGACTTCAATGATGCTCAAAATATGCAACC
EST: gi|58594516|gb|CF992824.1|CF992824
EST:     ATCTCTGTTGTTGGTGGTGCAGATGGAACAAGCCCTTCTAGAATGAGAGC                         GTTTATCAACCGAGAAGGCATTGACTTCAATGATGCTCAAAATATGCAACC
genomic: ATCTCTGTTGTTGGTGGTGCAGATGGAACAAGCCCTTCTAGAATGAGAGCgttagtctca ... tatgttacagGTTTATCAACCGAGAAGGCATTGACTTCAATGATGCTCAAAATATGCAACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaacagaatgtaatggtacaaaatttattaagaataccttgacatatgttacagGTTTATCAACCGAGAAGGCATTGACTTCAATGATGCTCAAAATATGCAACCTGTGCAG
                 tacaaaatttattaag  TA-rich tract