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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccaaagccttgcttatttagtttaaaaaggtaattggatatcgtgctgatgctttgatttcaaaattctgccaattgcagAACAAAAGGGATGTTGTGGCCACAATTGTGTATGAAATAATGCCTAATCCATCTGATCACAA

Basic information

species Oryza sativa
transcript LOC_Os01g37832.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g37832.1 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G090647_T04 (Zea mays), 3'ss of exon 6
gtaccaaagccttgctt----attta-gtttaa------aaaggtaattggatatcgtgctgatgctttgatttcaaaattctgccaattgcagAACAAAAGGGATGTTGTGGCCACAATTGTGTATGAAATAATGCCTAATCCATCTGATCACAA
||||  |||  ||| ||    ||||| |  |||      |||   | | | |   | | ||||| |||  ||| |    | ||||   |  ||||||||||||||||| || || |||||||| |||||| | ||||| ||||| |||||||||||
gtacttaagttttgttttgctatttatgcataataaagaaaaaacagtggaacgccatactgattctt--attgcttcgtgctgcttgtcccagAACAAAAGGGATGTAGTTGCAACAATTGTATATGAAGTCATGCCCAATCCTTCTGATCACAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88852617|gb|CI008810.1|CI008810
EST:     GTGACACAACTAAGATATATTACATTGGGTTGCGTGGTGAAGCTACTCAG                         AACCAAAGGGATGTTGTGGCCACAATTGTGTATGAAATAATGCCTAATCCA
genomic: GTGACACAACTAAGATATATTACATTGGGTTGCGTGGTGAAGCTACTCAGgtaccaaagc ... ccaattgcagAACAAAAGGGATGTTGTGGCCACAATTGTGTATGAAATAATGCCTAATCCA
EST: gi|58678373|gb|CK067060.1|CK067060
EST:     GTGACACAACTAAGATATATTACATTGGGTTGCGTGGTGAAGCTACTCAG                         AACAAAAGGGATGTTGTGGCCACAATTGTGTATGAAATAATGCCTAATCCA
genomic: GTGACACAACTAAGATATATTACATTGGGTTGCGTGGTGAAGCTACTCAGgtaccaaagc ... ccaattgcagAACAAAAGGGATGTTGTGGCCACAATTGTGTATGAAATAATGCCTAATCCA
EST: gi|218502566|gb|FG947236.1|FG947236
EST:     GTGACACAACTAAGATATATTACATTGGGTTGCGTGGTGAAGCTACTCAG                         AACAAAAGGGATGTTGTGGCCACAATTGTGTATGAAATAATGCCTAATCCA
genomic: GTGACACAACTAAGATATATTACATTGGGTTGCGTGGTGAAGCTACTCAGgtaccaaagc ... ccaattgcagAACAAAAGGGATGTTGTGGCCACAATTGTGTATGAAATAATGCCTAATCCA
EST: gi|88269573|gb|CI380871.1|CI380871
EST:     GTGACACAACTAAGATATATTACATTGGGTTGCGTGGTGAAGCTACTCAG                         AACAAAAGGGATGTTGTGGCCACAATTGTGTATGAAATAATGCCTAATCCA
genomic: GTGACACAACTAAGATATATTACATTGGGTTGCGTGGTGAAGCTACTCAGgtaccaaagc ... ccaattgcagAACAAAAGGGATGTTGTGGCCACAATTGTGTATGAAATAATGCCTAATCCA
EST: gi|88366636|gb|CI556420.1|CI556420
EST:     TATATTACATTGGGTTGCGTGGTGAAGCTACTCAG                         AACAAAAGGGATGTTGTGGCCACAATTGTGTATGAAATAATGCCTAATCCA
genomic: TATATTACATTGGGTTGCGTGGTGAAGCTACTCAGgtaccaaagc ... ccaattgcagAACAAAAGGGATGTTGTGGCCACAATTGTGTATGAAATAATGCCTAATCCA
EST: gi|40724664|gb|CK431262.1|CK431262
EST:     GTGACACAACTAAGATATATTACATTGGGTTGCGTGGTGAAGCTATTCAG                         AACAAAAGGGATGTTGTGGCCACAATTGTGTATGAAATAATGCCTAATCCA
genomic: GTGACACAACTAAGATATATTACATTGGGTTGCGTGGTGAAGCTACTCAGgtaccaaagc ... ccaattgcagAACAAAAGGGATGTTGTGGCCACAATTGTGTATGAAATAATGCCTAATCCA
EST: gi|58594516|gb|CF992824.1|CF992824
EST:     GTGACACAACTAAGATATATTACATTGGGTTGCGTGGTGAAGCTACTCAG                         AACAAAAGGGATGTTGTGGCCACAATTGTGTATGAAATAATGCCTAATCCA
genomic: GTGACACAACTAAGATATATTACATTGGGTTGCGTGGTGAAGCTACTCAGgtaccaaagc ... ccaattgcagAACAAAAGGGATGTTGTGGCCACAATTGTGTATGAAATAATGCCTAATCCA
EST: gi|87030834|gb|CI362048.1|CI362048
EST:     GTTACACAACTAAGATATATTACATTGGGTTGCGTGGTGAAGCTACTCAG                         AACAAAAGGGATGTTGTGGCCACAATTGTGTATGAAATAATGCCTAATCCA
genomic: GTGACACAACTAAGATATATTACATTGGGTTGCGTGGTGAAGCTACTCAGgtaccaaagc ... ccaattgcagAACAAAAGGGATGTTGTGGCCACAATTGTGTATGAAATAATGCCTAATCCA
EST: gi|88831856|gb|CI369538.1|CI369538
EST:     GTGACACAACTAAGATATATTACATTGGGTTGCGTGGTGAAGCTACTCAG                         AACAAAAGGGATGTTTTGGCCACAATTGTTTATGAAATAATGCCTAATCCA
genomic: GTGACACAACTAAGATATATTACATTGGGTTGCGTGGTGAAGCTACTCAGgtaccaaagc ... ccaattgcagAACAAAAGGGATGTTGTGGCCACAATTGTGTATGAAATAATGCCTAATCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaggtaattggatatcgtgctgatgctttgatttcaaaattctgccaattgcagAACAAAAGGGATGTTGTGGCCACAATTGTGTATGAAATAATGCCTAATCCATCTGATCACAA
                                        ttctgcc  CT-rich tract
                           tttgatttcaaaatt  TA-rich tract