1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTTTACATCAGACGTCAAGATCAAGAGCATCTCTGTTGTTGGTGGTGCAGATGGAACAAGCCCTTCTAGAATGAGAGCgttagtctcagagctctatcttttctgttacttgactcatctatttgtccctcttaacagaatgtaatggtacaaaatttattaagaataccttgacatatgttacag
species | Oryza sativa |
transcript | LOC_Os01g37832.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATCTCTGTTGTTGGTGGTGCAGATGGAACAAGCCCTTCTAGAATGAGAGC GTTTATCAACCGAGAAGGCATTGACTTCAATGATGCTCAAAATATGCAACCEST: gi|40724664|gb|CK431262.1|CK431262
genomic: ATCTCTGTTGTTGGTGGTGCAGATGGAACAAGCCCTTCTAGAATGAGAGCgttagtctca ... tatgttacagGTTTATCAACCGAGAAGGCATTGACTTCAATGATGCTCAAAATATGCAACC
EST: CTCTGTTGTTGGTGGTGCAAGATGGAACAAGCCCTTTCTAGAATGAGAGC GTTTATCAACCGAGAAGGCATTGACTTCAATGATGCTCAAAATATGCAACCEST: gi|58594516|gb|CF992824.1|CF992824
genomic: CTCTGTTGTTGGTGGTGC-AGATGGAACAAGCCC-TTCTAGAATGAGAGCgttagtctca ... tatgttacagGTTTATCAACCGAGAAGGCATTGACTTCAATGATGCTCAAAATATGCAACC
EST: ATCTCTGTTGTTGGTGGTGCAGATGGAACAAGCCCTTCTAGAATGAGAGC GTTTATCAACCGAGAAGGCATTGACTTCAATGATGCTCAAAATATGCAACC
genomic: ATCTCTGTTGTTGGTGGTGCAGATGGAACAAGCCCTTCTAGAATGAGAGCgttagtctca ... tatgttacagGTTTATCAACCGAGAAGGCATTGACTTCAATGATGCTCAAAATATGCAACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTACATCAGACGTCAAGATCAAGAGCATCTCTGTTGTTGGTGGTGCAGATGGAACAAGCCCTTCTAGAATGAGAGCgttagtctcagagctctatcttttctgttacttgactcatctatttgtccctcttaacagaatgtaatggtacaaaatttattaagaataccttgacatatgttacag
- - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - GATGGA