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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAGGAGGGGAGAGGATGGCGTGCCTGCACGACCACAGCTGCGAGGATCACAACTGCGCCGCCGACTGGTCGCTCTTCAACCACATCGACGTCCCCAAGgtccctctctctctctgcccctcgctcgcctggttgatcagatggattggcccccgtatcactcacttcgtttgatgttcctctttgaaattgctgttga...

Basic information

species Oryza sativa
transcript LOC_Os01g37832.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g37832.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G090647_T04 (Zea mays), 5'ss of exon 1
AGAAGGAGGGGAGAGGATGGCGTGCCTGCACGACCACAGCTGCGAGGATCACAACTGCGCCGCCGACTGGTCGCTCTTCAACCACATCGACGTCCCCAAGgtccctctctctctctgcccctcgctcgcctggttgatcagatggattggcccccgtatcactcacttcgtttgatgttcctctttgaaattgctgttga---
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AGGAGCACGAGGAGCCATGGCCTGCCTGCACGACCACAGCTGCGAGGATCACAACTGCGCCGCCGACTGGTCGCTCTACAACCACATCGACGTCCCCAAGgtcctgtaatccccccactccct-ctcacc-agttg-ccagattgatccgctgccccacctccctccttattgtgcctttgttttcgacggcttcgtaaggtt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33676798|gb|CF305037.1|CF305037
EST:     ACAACTGCGCCGCCGACTGGTCGCTCTTCAACCACATCGACGTCCCCAAG                         GTGGTGGCTCTGAACGAATCT
genomic: ACAACTGCGCCGCCGACTGGTCGCTCTTCAACCACATCGACGTCCCCAAGgtccctctct ... atatatacagGTGGTGGCTCTGAACGAATCT