1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GAATGGGAGCTGGCAGAGAATTTGCAGGGAGTTCTTGAGTACCAAACAAGgtttttccatttcccgtttgttctggtctagtatgctggtcttgctaacattcatgaatcgttcagtcaaattgtaattttcaagctaaaaaagtgtgtt...
species | Oryza sativa |
transcript | LOC_Os01g37832.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GAATGGGAGCTGGCAGAGAATTTGCAGGGAGTTCTTGAGTACCAAACAAG GTATTCAAGGTTCCAGGGTGTGGCTAACCTAACTCTACATTTCCCTGAGAAEST: gi|58678373|gb|CK067060.1|CK067060
genomic: GAATGGGAGCTGGCAGAGAATTTGCAGGGAGTTCTTGAGTACCAAACAAGgtttttccat ... ctttttccagGTATTCAAGGTTCCAGGGTGTGGCTAACCTAACTCTACATTTCCCTGAGAA
EST: GAATGGGAGCTGGCAGAGAATTTGCAGGGAGTTCTTGAGTACCAAACAAG GTATTCAAGGTTCCAGGGTGTGGCTAACCTAACTCTACATTTCCCTGAGAAEST: gi|218502566|gb|FG947236.1|FG947236
genomic: GAATGGGAGCTGGCAGAGAATTTGCAGGGAGTTCTTGAGTACCAAACAAGgtttttccat ... ctttttccagGTATTCAAGGTTCCAGGGTGTGGCTAACCTAACTCTACATTTCCCTGAGAA
EST: AGAGAATTTGCAGGGAGTTCTTGAGTACCAAACAAG GTATTCAAGGTTCCAGGGTGTGGCTAACCTAACTCTACATTTCCCTGAGAAEST: gi|40724664|gb|CK431262.1|CK431262
genomic: AGAGAATTTGCAGGGAGTTCTTGAGTACCAAACAAGgtttttccat ... ctttttccagGTATTCAAGGTTCCAGGGTGTGGCTAACCTAACTCTACATTTCCCTGAGAA
EST: GAATGGGAGCTGGCAGAGAATTTGCAGGGAGTTCTTGAGTACCAAACAAG GTATTCAAGGTTCCAGGGTGTGGCTAACCTAACTCTACATTTCCCTGAGAAEST: gi|58594516|gb|CF992824.1|CF992824
genomic: GAATGGGAGCTGGCAGAGAATTTGCAGGGAGTTCTTGAGTACCAAACAAGgtttttccat ... ctttttccagGTATTCAAGGTTCCAGGGTGTGGCTAACCTAACTCTACATTTCCCTGAGAA
EST: GAATGGGAGCTGGCAGAGAATTTGCAGGGAGTTCTTGAGTACCAAACAAG GTATTCAAGGTTCCAGCGGTGTGGCTAACCTAACTCTACATTTCCCTGAGA
genomic: GAATGGGAGCTGGCAGAGAATTTGCAGGGAGTTCTTGAGTACCAAACAAGgtttttccat ... ctttttccagGTATTCAAGGTTCCAG-GGTGTGGCTAACCTAACTCTACATTTCCCTGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATGGGAGCTGGCAGAGAATTTGCAGGGAGTTCTTGAGTACCAAACAAGgtttttccatttcccgtttgttctggtctagtatgctggtcttgctaacattcatgaatcgttcagtcaaattgtaattttcaagctaaaaaagtgtgtt
- - GGAGCT