1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CGCATTGTGGCACATTTACTGTTTCATAAGCCTTGTTCAAAGGTTTCAACACCTGCAAAAGAAGAGATCAAATCCTCAACTCCATTGCCAACTGAACCTGgtgtgtgtgtgtttataatatatttgttggttaactagtctgaatatgccatcgttaggtatgtatacacaatgaactaacatgatgcttgggatttacaacactgtgcag
species | Oryza sativa |
transcript | LOC_Os01g31360.3 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: ACCTGCAAAAGAAGAGATCAAATCCTCAACTCCATTGCCAACTGAACCTG ATTCGAAGATTCCTACAGACGCACCTGGGGGACCATCAGAAAATCACCAGAEST: gi|86901232|gb|CI326075.1|CI326075
genomic: ACCTGCAAAAGAAGAGATCAAATCCTCAACTCCATTGCCAACTGAACCTGgtgtgtgtgt ... cactgtgcagATTCGAAGATTCCTACAGACGCACCTGGGGGACCATCAGAAAATCACCAGA
EST: ACCTGCAAAAGAAGAGATCAAATCCTCAACTCCATTGCCAACTGAACCTG ATTCGAAGATTCCTACAGACGCACCTGGGG-ACCATCAGAAAATCACCAGAEST: gi|86528468|gb|CI168674.1|CI168674
genomic: ACCTGCAAAAGAAGAGATCAAATCCTCAACTCCATTGCCAACTGAACCTGgtgtgtgtgt ... cactgtgcagATTCGAAGATTCCTACAGACGCACCTGGGGGACCATCAGAAAATCACCAGA
EST: ACCTGCAAAAGAAGAGATCAAATCCTCAACTCCATTGCCAACTGAACCTG ATTCGAAGATTCCTACAGACGCACCTGGGGGACCATCAGAAAATCACCAGAEST: gi|29626990|gb|CB632001.1|CB632001
genomic: ACCTGCAAAAGAAGAGATCAAATCCTCAACTCCATTGCCAACTGAACCTGgtgtgtgtgt ... cactgtgcagATTCGAAGATTCCTACAGACGCACCTGGGGGACCATCAGAAAATCACCAGA
EST: ACCTGCAAAAGAAGAGATCAAATCCTCAACTCCATTGCCAACTGAACCTG ATTCGAAGATTCCTACAGACGCACCTGGGGGACCATCAGAAAATCACCAGA
genomic: ACCTGCAAAAGAAGAGATCAAATCCTCAACTCCATTGCCAACTGAACCTGgtgtgtgtgt ... cactgtgcagATTCGAAGATTCCTACAGACGCACCTGGGGGACCATCAGAAAATCACCAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCATTGTGGCACATTTACTGTTTCATAAGCCTTGTTCAAAGGTTTCAACACCTGCAAAAGAAGAGATCAAATCCTCAACTCCATTGCCAACTGAACCTGgtgtgtgtgtgtttataatatatttgttggttaactagtctgaatatgccatcgttaggtatgtatacacaatgaactaacatgatgcttgggatttacaacactgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA