1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tctttttgctgcttgcaagtagctagctgccgttgcgtatatatgagtacaataggtatattttttttcagtgacaaattcttgattgatacaatcccagATCTCCAGCAAGTGAAGCAGAAACAAACACAAATCCAATCGACCGCATTGTGGCACATTTACTGTTTCATAAGCCTTGTTCAAAGGTTTCAACACCTGCA
species | Oryza sativa |
transcript | LOC_Os01g31360.3 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AAGAGTAATAAAGATGATGATGAAGTTTCAGAAGACACATCTAAAAGAAG ATCTCCAGCAAGTGAAGCAGAAACAAACACAAATCCAATCGACCGCATTGTEST: gi|86901232|gb|CI326075.1|CI326075
genomic: AAGAGTAATAAAGATGATGATGAAGTTTCAGAAGACACATCTAAAAGAAGgtatgctttg ... acaatcccagATCTCCAGCAAGTGAAGCAGAAACAAACACAAATCCAATCGACCGCATTGT
EST: AAGAGTAATAAAGATGATGATGAAGTTTCAGAAGACACATGTAAAAGAAG ATCTCCAGCAAGTGAAGCAGAAACAAACACAAATCCAATCGACCGCATTGTEST: gi|29626990|gb|CB632001.1|CB632001
genomic: AAGAGTAATAAAGATGATGATGAAGTTTCAGAAGACACATCTAAAAGAAGgtatgctttg ... acaatcccagATCTCCAGCAAGTGAAGCAGAAACAAACACAAATCCAATCGACCGCATTGT
EST: AAGAGTAATAAAGATGATGATGAAGTTTCAGAAGACACATCTAAAAGAAG ATCTCCAGCAAGTGAAGCAGAAACAAACACAAATCCAATCGACCGCATTGT
genomic: AAGAGTAATAAAGATGATGATGAAGTTTCAGAAGACACATCTAAAAGAAGgtatgctttg ... acaatcccagATCTCCAGCAAGTGAAGCAGAAACAAACACAAATCCAATCGACCGCATTGT
agtacaataggtatattttttttcagtgacaaattcttgattgatacaatcccagATCTCCAGCAAGTGAAGCAGAAACAAACACAAATCCAATCGACCGCATTGTGGCACATTTACTGTTTCATAAGCCTTGTTCAAAGGTTTCAACACCTGCA
gattgat putative branch site (score: 77)
aataggtatatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctttttgctgcttgcaagtagctagctgccgttgcgtatatatgagtacaataggtatattttttttcagtgacaaattcttgattgatacaatcccagATCTCCAGCAAGTGAAGCAGAAACAAACACAAATCCAATCGACCGCATTGTGGCACATTTACTGTTTCATAAGCCTTGTTCAAAGGTTTCAACACCTGCA
- tttttgc
- - - - -tgcttgc
- - - - - - - - - - - - agctgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgattg