1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tgaatattgattagtttatctgacttgtagggaacaagtttgctctcttcctaactaaatgtaaatatgtttctgaacacaaatatgcttctccatgtagGGAGATGTGCAGAAGAAGTCAGTGAGGTCACGGAGAAGAACAGAAGAAAGAGGCAAAAGTAAAATGTCCAATAGTACAAGTGGCTTCTCCCAGAACCAAG
species | Oryza sativa |
transcript | LOC_Os01g31360.3 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CGCTTCTGATTAATGAAACGTCTGGTGGAACTACCGAACAAGAAAGCAAG GGAGATGTGCAGAAGAAGTCAGTGAGGTCACGGAGAAGAACAGAAGAAAGAEST: gi|33381695|gb|CF197038.1|CF197038
genomic: CGCTTCTGATTAATGAAACATCTGGTGGAACTACCGAACAAGAAAGCAAGgtaaatgtct ... ctccatgtagGGAGATGTGCAGAAGAAGTCAGTGAGGTCACGGAGAAGAACAGAAGAAAGA
EST: CGCTTCTGATTAATGAAACGTCTGGTGGAACTACCGAACAAGAAAGCAAG GGAGATGTGCAGAAGAAGTCAGTGAGGTCACGGAGAAGAACAGAAGAAAGA
genomic: CGCTTCTGATTAATGAAACATCTGGTGGAACTACCGAACAAGAAAGCAAGgtaaatgtct ... ctccatgtagGGAGATGTGCAGAAGAAGTCAGTGAGGTCACGGAGAAGAACAGAAGAAAGA
tcttcctaactaaatgtaaatatgtttctgaacacaaatatgcttctccatgtagGGAGATGTGCAGAAGAAGTCAGTGAGGTCACGGAGAAGAACAGAAGAAAGAGGCAAAAGTAAAATGTCCAATAGTACAAGTGGCTTCTCCCAGAACCAAG
tgcttctcc CT-rich tract
taactaaatgtaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaatattgattagtttatctgacttgtagggaacaagtttgctctcttcctaactaaatgtaaatatgtttctgaacacaaatatgcttctccatgtagGGAGATGTGCAGAAGAAGTCAGTGAGGTCACGGAGAAGAACAGAAGAAAGAGGCAAAAGTAAAATGTCCAATAGTACAAGTGGCTTCTCCCAGAACCAAG
- - - - - - - - - - tgacttg
- - - - - - - - - - - - - - - -gaacaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgctt