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gtaagatgtattaatggaagattttgctcaaagaccagtgagatcataattctttgtgtatctgatggcccaatttctctgcgaatggctggtgtttctccttagAGTATGTGGCAGGGGACCAATGAATTGCTCAACATCAACATGGTTAGCTGCCTCTAAAGATGGCCATTGCCAGTCCGCTGATCACCTCCACTGTCAGAGA
species | Oryza sativa |
transcript | LOC_Os01g31360.3 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AGAAAATCACCAGAATGGGCAAGAAATGACACTGCAGCCTTCACTGTAAT AGTATGTGGCAGGGGACCAATGAATTGCTCAACATCAACATGGTTAGCTGCEST: gi|86901232|gb|CI326075.1|CI326075
genomic: AGAAAATCACCAGAATGGGCAAGAAATGACACTGCAGCCTTCACTGTAATgtaagatgta ... ttctccttagAGTATGTGGCAGGGGACCAATGAATTGCTCAACATCAACATGGTTAGCTGC
EST: AGAAAATCACCAGAATGGGCAAGAAATGACACTGCAGCCTTCACTGTAAT AGTATGTGGCAGGGGACCAATGAATTGCTCAACATCAACATGGT-AGCTGCEST: gi|86528468|gb|CI168674.1|CI168674
genomic: AGAAAATCACCAGAATGGGCAAGAAATGACACTGCAGCCTTCACTGTAATgtaagatgta ... ttctccttagAGTATGTGGCAGGGGACCAATGAATTGCTCAACATCAACATGGTTAGCTGC
EST: AGAAAATCACCAGAATGGGCAAGAAATGACACTGCAGCCTTCACTGTAAT AGTATGTGGCAGGGGACCAATGAATTGCTCAACATCAACATGGTTAGCTGCEST: gi|29626990|gb|CB632001.1|CB632001
genomic: AGAAAATCACCAGAATGGGCAAGAAATGACACTGCAGCCTTCACTGTAATgtaagatgta ... ttctccttagAGTATGTGGCAGGGGACCAATGAATTGCTCAACATCAACATGGTTAGCTGC
EST: AGAAAATCACCAGAATGGGCAAGAAATGACACTGCAGCCTTCACTGTAAT AGTATGTGGCAGGGGACCAATGAATTGCTCAACATCAACATGGTTAGCTGC
genomic: AGAAAATCACCAGAATGGGCAAGAAATGACACTGCAGCCTTCACTGTAATgtaagatgta ... ttctccttagAGTATGTGGCAGGGGACCAATGAATTGCTCAACATCAACATGGTTAGCTGC
tctttgtgtatctgatggcccaatttctctgcgaatggctggtgtttctccttagAGTATGTGGCAGGGGACCAATGAATTGCTCAACATCAACATGGTTAGCTGCCTCTAAAGATGGCCATTGCCAGTCCGCTGATCACCTCCACTGTCAGAGA
atctgat putative branch site (score: 5)
tgtttctcctt putative PPT
aatttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatgtattaatggaagattttgctcaaagaccagtgagatcataattctttgtgtatctgatggcccaatttctctgcgaatggctggtgtttctccttagAGTATGTGGCAGGGGACCAATGAATTGCTCAACATCAACATGGTTAGCTGCCTCTAAAGATGGCCATTGCCAGTCCGCTGATCACCTCCACTGTCAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT