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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTTACCACCACAATGGACTTTGACTTCAATACGATAGCTGGTCGCATCCGGGAACTTGCCTTTCTAAATCCTGAGgtataaattgtattgttttatatttcctgttgctagttctcgaagatatcattgaacaatcattatttcctttatttgtttatcggtcagctaatgcttg...

Basic information

species Oryza sativa
transcript LOC_Os01g16290.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g16290.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G111014_T01 (Zea mays), 5'ss of exon 8
TTTTTACCACCACAATGGACTTTGACTTCAATACGATAGCTGGTCGCATCCGGGAACTTGCCTTTCTAAATCCTGAGgtata-aattgtattgttttata--tttcctgttgctagttct-----cgaagatatcattgaacaatcattatttcctttatttgtttatcggtcagctaatgcttg
| ||||||||||| || || |||||||||||||| ||  |  ||||||| ||||| |||||||||||||||||||||||||  |||  |  |  |  |||  || |   |   |||  |      |   ||| |||    |  |  |||||||| ||| | || |    | |    |        
TATTTACCACCACGATCGATTTTGACTTCAATACAATCTCCAGTCGCATACGGGAGCTTGCCTTTCTAAATCCTGAGgtatgtaatccttctcctaaataacttacacataattagcccgacttgcagggatttcagcagattaatattatttcatttctatgctagctgattcatt--------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58688095|gb|CK076782.1|CK076782
EST:     TCTAAATCCTGAG                         CTGACAATAGCATTGACAAAGGAAGAAGATGACTTACAGGTTCAACACAAG
genomic: TCTAAATCCTGAGgtataaattg ... tcaatgccagCTGACAATAGCATTGACAAAGGAAGAAGATGACTTACAGGTTCAACACAA-