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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcttctgtctttacatatttttttagctgtaccattactacttatgttccccaatgtgtaattattgttcttgatgtagTTTTTACCACCACAATGGACTTTGACTTCAATACGATAGCTGGTCGCATCCGGGAACTTGCCTTTCTAAATCCTGAG

Basic information

species Oryza sativa
transcript LOC_Os01g16290.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g16290.1 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G111014_T01 (Zea mays), 3'ss of exon 7
gtatgcttctgtctttacatat---ttttttagctgtac-------cattactacttatgtt-ccccaatgtgtaattattgttcttgatgtagTTTTTACCACCACAATGGACTTTGACTTCAATACGATAGCTGGTCGCATCCGGGAACTTGCCTTTCTAAATCCTGAG
||| |||| | |  ||||| ||    | | | |    ||       ||  |||| | ||| | | |||  |  |||| ||| || |  ||||||| ||||||||||| || || |||||||||||||| ||  |  ||||||| ||||| |||||||||||||||||||||
gtaagcttatattcttacaaataagctgtctggtctaacttctaagcaccactagtgatgctgctccagggattaatcattattttgaatgtagTATTTACCACCACGATCGATTTTGACTTCAATACAATCTCCAGTCGCATACGGGAGCTTGCCTTTCTAAATCCTGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agctgtaccattactacttatgttccccaatgtgtaattattgttcttgatgtagTTTTTACCACCACAATGGACTTTGACTTCAATACGATAGCTGGTCGCATCCGGGAACTTGCCTTTCTAAATCCTGAG
                                            tcttgat  putative branch site (score: 4)
                                        ttgttctt  CT-rich tract
                            aatgtgtaattatt  TA-rich tract