1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtaacagcttgctcctgatacagacaaatgtgccagaagaatgattcgataacttttgtcttttaagtgctgatgattggctaaatcttgtttcttttctcttttcacagACGAGGTTGGGAAATCCAGAAGTCCGAAGAATAGTTGAACAATCTGTTCAAGAAAATTTAACTGAGTACTTAGAGTTACATCCAGATGTTTTAGATTCGA
species | Oryza sativa |
transcript | LOC_Os01g16290.2 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GCATTATTGCAGTGAAGGTCCCTAATCCAGAGTTTGAAGGGCAAACAAAG ACGAGGTTGGGAAATCCAGAAGTCCGAAGAATAGTTGAACAATCTGTTCAAEST: gi|58612081|gb|CK039793.1|CK039793
genomic: GCATTATTGCAGTGAAGGTCCCTAATCCAGAGTTTGAAGGGCAAACAAAGgtaacagctt ... cttttcacagACGAGGTTGGGAAATCCAGAAGTCCGAAGAATAGTTGAACAATCTGTTCAA
EST: GCATTGTTGCAGTGAAGGTCCCTAATCCAGAGTTTGAAGGGCAAACAAAG ACGAGGTTGGGAAATCCAGAAGTCCGAAGAATAGTTGAACAATCTGTTCAAEST: gi|58688095|gb|CK076782.1|CK076782
genomic: GCATTATTGCAGTGAAGGTCCCTAATCCAGAGTTTGAAGGGCAAACAAAGgtaacagctt ... cttttcacagACGAGGTTGGGAAATCCAGAAGTCCGAAGAATAGTTGAACAATCTGTTCAA
EST: GCATTATTGCAGTGAAGGTCCCTAATCCAGAGTTTGAAGGGCAAACAAAG ACGAGGTTGGGAAATCCAGAAGTCCGAAGAATAGTTGAACAATCTGTTCAAEST: gi|58686794|gb|CK075481.1|CK075481
genomic: GCATTATTGCAGTGAAGGTCCCTAATCCAGAGTTTGAAGGGCAAACAAAGgtaacagctt ... cttttcacagACGAGGTTGGGAAATCCAGAAGTCCGAAGAATAGTTGAACAATCTGTTCAA
EST: GCATTATTGCAGTGAAGGTCCCTAATCCAGAGTTTGAAGGGCAAACAAAG ACGAGGTTGGGAAATCCAGAAGTCCGAAGAATAGTTGAACAATCTGTTCAA
genomic: GCATTATTGCAGTGAAGGTCCCTAATCCAGAGTTTGAAGGGCAAACAAAGgtaacagctt ... cttttcacagACGAGGTTGGGAAATCCAGAAGTCCGAAGAATAGTTGAACAATCTGTTCAA
ttgtcttttaagtgctgatgattggctaaatcttgtttcttttctcttttcacagACGAGGTTGGGAAATCCAGAAGTCCGAAGAATAGTTGAACAATCTGTTCAAGAAAATTTAACTGAGTACTTAGAGTTACATCCAGATGTTTTAGATTCGA
ggctaaa putative branch site (score: 3)
tcttgtttcttttctc CT-rich tract
ttttaagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacagcttgctcctgatacagacaaatgtgccagaagaatgattcgataacttttgtcttttaagtgctgatgattggctaaatcttgtttcttttctcttttcacagACGAGGTTGGGAAATCCAGAAGTCCGAAGAATAGTTGAACAATCTGTTCAAGAAAATTTAACTGAGTACTTAGAGTTACATCCAGATGTTTTAGATTCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG