Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGATGACTTTCATGCTAAAGTGTCTGATTTTGGTTTGGCCAAACAGGCACCGGAAGGTTGCACAAATTATCTCTCAACACGTGTTATGGGAACATTCGGgtaagcaggttgaccaccttgaagtactccccagatgtttctgctctgcttttgcttcatatagctgtcgtgctttcag

Basic information

species Oryza sativa
transcript LOC_Os01g14932.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g14932.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G180065_T01 (Zea mays), 5'ss of exon 6
AGGATGACTTTCATGCTAAAGTGTCTGATTTTGGTTTGGCCAAACAGGCACCGGAAGGTTGCACAAATTATCTCTCAACACGTGTTATGGGAACATTCGGgtaagcaggttgaccaccttgaagtactc------------cccagatgtttctgctctg------cttttgcttcatatagctgtcgtgctttcag
|| |||| || |||||||||||||| ||||||||| |||| |||||||| ||||||||| | || || ||||| || || |||||||||||||| ||||||||| | |  || ||   |  |  ||  |            |||||   ||| |  ||||      | ||  | |  ||   ||| | |  || |||
AGAATGATTTCCATGCTAAAGTGTCCGATTTTGGTCTGGCAAAACAGGCGCCGGAAGGTCGGACGAACTATCTTTCTACTCGTGTTATGGGAACTTTCGGgtaatctgaatgtccttttacatttagccatgggtccatggcccagcaatttattttctgaatttaccttcaccttgtacttctggcctttttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29625207|gb|CB630218.1|CB630218
EST:     CCGGAAGGTTGCACAAATTATCTCTCAACACGTGTTATGGGAACATTCGG                         GTATGTAGCACCAGAGTATGCAATGACAGGACACTTGCTTGTAAAAAGCGA
genomic: CCGGAAGGTTGCACAAATTATCTCTCAACACGTGTTATGGGAACATTCGGgtaagcaggt ... gtgctttcagGTATGTAGCACCAGAGTATGCAATGACAGGACACTTGCTTGTAAAAAGCGA
EST: gi|88902229|gb|CI374837.1|CI374837
EST:     CCGGAAGGTTGCACAAATTATCTCTCAACACCTGTTATGGGAACATTCGG                         GTATGTAGCACCAGAGTATGCAATGACAGGACACTTGCTTGTAAAAAGCGA
genomic: CCGGAAGGTTGCACAAATTATCTCTCAACACGTGTTATGGGAACATTCGGgtaagcaggt ... gtgctttcagGTATGTAGCACCAGAGTATGCAATGACAGGACACTTGCTTGTAAAAAGCGA
EST: gi|3763864|gb|AU030603.1|AU030603
EST:     CCGGAAG-TTGCACAAATTATCTCTCAACACGTGTTATGGGA-CATTCGG                         GTATGTAGCACCAGAGTATGCCATGACAGGACACTTGCTTGTNAAA-GCGA
genomic: CCGGAAGGTTGCACAAATTATCTCTCAACACGTGTTATGGGAACATTCGGgtaagcaggt ... gtgctttcagGTATGTAGCACCAGAGTATGCAATGACAGGACACTTGCTTGTAAAAAGCGA
EST: gi|29619813|gb|CB624825.1|CB624825
EST:     CCGGAAGGTTGCACAAATTATCTCTCAACACGTGTTATGGGAACATTCGG                         GTATGTAGCACCAGAGTATGCAATGACAGGACACTTGCTTGTAAAAAGCGA
genomic: CCGGAAGGTTGCACAAATTATCTCTCAACACGTGTTATGGGAACATTCGGgtaagcaggt ... gtgctttcagGTATGTAGCACCAGAGTATGCAATGACAGGACACTTGCTTGTAAAAAGCGA
EST: gi|29628587|gb|CB633598.1|CB633598
EST:     CCGGAAGGTTGCACAAATTATCTCTCAACACGTGTTATGGGAACATTCGG                         GTATGTAGCACCAGAGTATGCAATGACAGGACACTTGCTTGTAAAAAGCGA
genomic: CCGGAAGGTTGCACAAATTATCTCTCAACACGTGTTATGGGAACATTCGGgtaagcaggt ... gtgctttcagGTATGTAGCACCAGAGTATGCAATGACAGGACACTTGCTTGTAAAAAGCGA