1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...attatttctttatatttacagccctgtatgctgtccagctatggtttttcttttaacaaatctcctttcctaatattgtgatctttcatttctatttcagCTCCAACATTCACAATATCACCTAAACCCTCTCCATCTCAAGCATCTACAGTACCAAGACACAGTGCGGATACCAGCAATGAAAAACACATGAGCTTGAT
species | Oryza sativa |
transcript | LOC_Os01g14932.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTACAATCTTCTTAATTTAACCTGGTTCAGGCCACTGGTTCTAGCTCCTG CTCCAACATTCACAATATCACCTAAACCCTCTCCATCTCAAGCATCTACAGEST: gi|29665064|gb|CB661339.1|CB661339
genomic: CTACAATCTTCTTAATTTAACCTGGTTCAGGCCACTGGTTCTAGCTCCTGgtaatgctaa ... tctatttcagCTCCAACATTCACAATATCACCTAAACCCTCTCCATCTCAAGCATCTACAG
EST: CTACAATCTTCTTAATTTAACCTGGTTCAGGCCACTGGTTCTAGCTCCTG CTCCAACATTCANCA-TATCACCTAAACCCTCTCCAEST: gi|29619779|gb|CB624791.1|CB624791
genomic: CTACAATCTTCTTAATTTAACCTGGTTCAGGCCACTGGTTCTAGCTCCTGgtaatgctaa ... tctatttcagCTCCAACATTCA-CAATATCACCTAAACCCTCTCCA
EST: CTACAATCTTCTTAATTTAACCTGGTTCAGGCCACTGGTTCTAGCTCCTG CTCCAACATTCACAATATCACCTAAACCCTCTCCATCTCAAGCATCTACAG
genomic: CTACAATCTTCTTAATTTAACCTGGTTCAGGCCACTGGTTCTAGCTCCTGgtaatgctaa ... tctatttcagCTCCAACATTCACAATATCACCTAAACCCTCTCCATCTCAAGCATCTACAG
ttttcttttaacaaatctcctttcctaatattgtgatctttcatttctatttcagCTCCAACATTCACAATATCACCTAAACCCTCTCCATCTCAAGCATCTACAGTACCAAGACACAGTGCGGATACCAGCAATGAAAAACACATGAGCTTGAT
tcctaat putative branch site (score: 2)
tctttcatttctattt putative PPT
tttcatttctattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attatttctttatatttacagccctgtatgctgtccagctatggtttttcttttaacaaatctcctttcctaatattgtgatctttcatttctatttcagCTCCAACATTCACAATATCACCTAAACCCTCTCCATCTCAAGCATCTACAGTACCAAGACACAGTGCGGATACCAGCAATGAAAAACACATGAGCTTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - tgtatgc
- - - - - - - - - - - - - - - - -tccagct
- - - - - - - - - - - - - - - - - - - - - - - - - - -taacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttcatt