1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...agtgttcatattcattagttgcacctgaccagtgtcaatgtacatacatattctttaaggcgttgacttgttgattcttcattgtactgtttcttggcagGGCTTTTGGAAGATGCTCGAAGGAAAACCTTCTTAAATTTTTTGGCTGTGGTATTTACTCTGGAATTGATTACCAGAATCAATTTGATTGCCCAAACATC
species | Oryza sativa |
transcript | LOC_Os01g14932.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGAGGGGCATCCAACGATGGCGCGGATACGGCGCGCGAGCTCCGGACGAG GGCTTTTGGAAGATGCTCGAAGGAAAACCTTCTTAAATTTTTTGGCTGTGGEST: gi|58663487|gb|CK052173.1|CK052173
genomic: CGAGGGGCATCCAACGATGGCGCGGATACGGCGCGCGAGCTCCGGACGAGgttagtgtgg ... ttcttggcagGGCTTTTGGAAGATGCTCGAAGGAAAACCTTCTTAAATTTTTTGGCTGTGG
EST: ACGA-GGCGCGGATACGGCGCGCGAGCTCCGGACGAG GGCTTTTGGAAGATGCTCGAAGGAAAACCTTCTTAAATTTTTTGGCTGTGG
genomic: ACGATGGCGCGGATACGGCGCGCGAGCTCCGGACGAGgttagtgtgg ... ttcttggcagGGCTTTTGGAAGATGCTCGAAGGAAAACCTTCTTAAATTTTTTGGCTGTGG
acatattctttaaggcgttgacttgttgattcttcattgtactgtttcttggcagGGCTTTTGGAAGATGCTCGAAGGAAAACCTTCTTAAATTTTTTGGCTGTGGTATTTACTCTGGAATTGATTACCAGAATCAATTTGATTGCCCAAACATC
tgttgat putative branch site (score: 4)
ctgtttctt putative PPT
ttctttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtgttcatattcattagttgcacctgaccagtgtcaatgtacatacatattctttaaggcgttgacttgttgattcttcattgtactgtttcttggcagGGCTTTTGGAAGATGCTCGAAGGAAAACCTTCTTAAATTTTTTGGCTGTGGTATTTACTCTGGAATTGATTACCAGAATCAATTTGATTGCCCAAACATC
- - - - - - - - - ttgcacc
- - - - - - - - - - - - - - - - - - - - - catacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttgttg